Analysis of interatomic Contacts of Structural Units in PDB entry:
6MCB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MCB entry

There are 3 chains in PDB entry 6MCB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 G 2 U 116
A
 LYS 3GLY 1366
C
 MET 1LYS 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 6MCB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 94Right-handed alpha
Helix 2
AA2
A
96 103Right-handed alpha
Helix 3
AA3
A
121 132Right-handed alpha
Helix 4
AA4
A
134 144Right-handed alpha
Helix 5
AA5
A
150 164Right-handed alpha
Helix 6
AA6
A
180 196Right-handed alpha
Helix 7
AA7
A
207 213Right-handed alpha
Helix 8
AA8
A
217 229Right-handed alpha
Helix 9
AA9
A
236 247Right-handed alpha
Helix 10
AB1
A
270 283Right-handed alpha
Helix 11
AB2
A
286 306Right-handed alpha
Helix 12
AB3
A
317 343Right-handed alpha
Helix 13
AB4
A
347 352Right-handed alpha
Helix 14
AB5
A
358 363Right-handed alpha
Helix 15
AB6
A
368 377Right-handed alpha
Helix 16
AB7
A
377 382Right-handed alpha
Helix 17
AB8
A
390 395Right-handed alpha
Helix 18
AB9
A
404 410Right-handed 310
Helix 19
AC1
A
411 426Right-handed alpha
Helix 20
AC2
A
430 436Right-handed alpha
Helix 21
AC3
A
436 445Right-handed alpha
Helix 22
AC4
A
475 479Right-handed 310
Helix 23
AC5
A
483 496Right-handed alpha
Helix 24
AC6
A
512 525Right-handed alpha
Helix 25
AC7
A
541 552Right-handed alpha
Helix 26
AC8
A
560 568Right-handed alpha
Helix 27
AC9
A
591 602Right-handed alpha
Helix 28
AD1
A
603 608Right-handed alpha
Helix 29
AD2
A
612 626Right-handed alpha
Helix 30
AD3
A
628 634Right-handed alpha
Helix 31
AD4
A
637 642Right-handed 310
Helix 32
AD5
A
647 652Right-handed alpha
Helix 33
AD6
A
663 668Right-handed alpha
Helix 34
AD7
A
678 685Right-handed alpha
Helix 35
AD8
A
692 698Right-handed alpha
Helix 36
AD9
A
703 713Right-handed alpha
Helix 37
AE1
A
719 726Right-handed alpha
Helix 38
AE2
A
730 751Right-handed alpha
Helix 39
AE3
A
769 773Right-handed 310
Helix 40
AE4
A
776 792Right-handed alpha
Helix 41
AE5
A
808 817Right-handed alpha
Helix 42
AE6
A
872 879Right-handed alpha
Helix 43
AE7
A
879 888Right-handed alpha
Helix 44
AE8
A
893 901Right-handed alpha
Helix 45
AE9
A
909 922Right-handed alpha
Helix 46
AF1
A
925 940Right-handed alpha
Helix 47
AF2
A
959 970Right-handed alpha
Helix 48
AF3
A
981 1001Right-handed alpha
Helix 49
AF4
A
1004 1009Right-handed alpha
Helix 50
AF5
A
1042 1047Right-handed 310
Helix 51
AF6
A
1078 1087Right-handed alpha
Helix 52
AF7
A
1127 1132Right-handed alpha
Helix 53
AF8
A
1170 1177Right-handed alpha
Helix 54
AF9
A
1177 1186Right-handed alpha
Helix 55
AG1
A
1207 1209Right-handed 310
Helix 56
AG2
A
1229 1241Right-handed alpha
Helix 57
AG3
A
1248 1262Right-handed alpha
Helix 58
AG4
A
1263 1278Right-handed alpha
Helix 59
AG5
A
1283 1297Right-handed alpha
Helix 60
AG6
A
1301 1313Right-handed alpha
Helix 61
AG7
A
1314 1316Right-handed 310
Helix 62
AG8
C
5 19Right-handed alpha
Helix 63
AG9
C
32 38Right-handed alpha
Helix 64
AH1
C
104 114Right-handed alpha
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There are 11 sheets in PDB entry 6MCB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
954 957first strand
Strand 2
A
758 762parallel
Strand 3
A
6 11parallel
Strand 4
A
15 21anti-parallel
Strand 5
A
48 52anti-parallel
Strand 6
A
1093 1096parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
42 46anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
1357 1361parallel
Strand 3
A
1346 1350anti-parallel
Strand 4
A
1203 1205anti-parallel
Strand 5
A
1211 1213anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 539first strand
Strand 2
A
528 530anti-parallel
Strand 3
A
579 580anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
838 840first strand
Strand 2
A
855 857anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1063 1065first strand
Strand 2
A
1072 1075anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1106 1111first strand
Strand 2
A
1133 1137anti-parallel
Strand 3
A
1120 1121anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1139 1141first strand
Strand 2
A
1166 1167anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1145 1151first strand
Strand 2
A
1156 1162anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1324 1325first strand
Strand 2
A
1330 1331anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 80first strand
Strand 2
C
87 94anti-parallel
Strand 3
C
41 46anti-parallel
Strand 4
C
120 121anti-parallel
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