Analysis of interatomic Contacts of Structural Units in PDB entry:
6MCC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MCC entry

There are 3 chains in PDB entry 6MCC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
G 2 U 116
A
LYS 3GLY 1366
C
MET 1ASN 130
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 6MCC. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
60 86Right-handed alpha
Helix 2
AA2
A
89 94Right-handed alpha
Helix 3
AA3
A
96 102Right-handed alpha
Helix 4
AA4
A
122 132Right-handed alpha
Helix 5
AA5
A
134 144Right-handed alpha
Helix 6
AA6
A
150 160Right-handed alpha
Helix 7
AA7
A
180 197Right-handed alpha
Helix 8
AA8
A
207 212Right-handed alpha
Helix 9
AA9
A
217 229Right-handed alpha
Helix 10
AB1
A
236 245Right-handed alpha
Helix 11
AB2
A
270 283Right-handed alpha
Helix 12
AB3
A
286 306Right-handed alpha
Helix 13
AB4
A
317 340Right-handed alpha
Helix 14
AB5
A
358 364Right-handed alpha
Helix 15
AB6
A
368 383Right-handed alpha
Helix 16
AB7
A
389 394Right-handed alpha
Helix 17
AB8
A
411 425Right-handed alpha
Helix 18
AB9
A
431 435Right-handed 310
Helix 19
AC1
A
436 446Right-handed alpha
Helix 20
AC2
A
474 478Right-handed 310
Helix 21
AC3
A
484 495Right-handed alpha
Helix 22
AC4
A
512 524Right-handed alpha
Helix 23
AC5
A
541 552Right-handed alpha
Helix 24
AC6
A
560 568Right-handed alpha
Helix 25
AC7
A
591 602Right-handed alpha
Helix 26
AC8
A
604 609Right-handed alpha
Helix 27
AC9
A
612 626Right-handed alpha
Helix 28
AD1
A
630 635Right-handed alpha
Helix 29
AD2
A
636 640Right-handed 310
Helix 30
AD3
A
647 652Right-handed alpha
Helix 31
AD4
A
678 683Right-handed alpha
Helix 32
AD5
A
692 699Right-handed alpha
Helix 33
AD6
A
702 712Right-handed alpha
Helix 34
AD7
A
719 725Right-handed alpha
Helix 35
AD8
A
730 751Right-handed alpha
Helix 36
AD9
A
769 773Right-handed 310
Helix 37
AE1
A
774 779Right-handed alpha
Helix 38
AE2
A
781 791Right-handed alpha
Helix 39
AE3
A
794 798Right-handed 310
Helix 40
AE4
A
808 816Right-handed alpha
Helix 41
AE5
A
860 864Right-handed 310
Helix 42
AE6
A
872 879Right-handed alpha
Helix 43
AE7
A
879 889Right-handed alpha
Helix 44
AE8
A
893 901Right-handed alpha
Helix 45
AE9
A
909 920Right-handed alpha
Helix 46
AF1
A
925 940Right-handed alpha
Helix 47
AF2
A
959 970Right-handed alpha
Helix 48
AF3
A
980 999Right-handed alpha
Helix 49
AF4
A
1002 1006Right-handed 310
Helix 50
AF5
A
1041 1046Right-handed 310
Helix 51
AF6
A
1075 1078Right-handed 310
Helix 52
AF7
A
1079 1088Right-handed alpha
Helix 53
AF8
A
1170 1177Right-handed alpha
Helix 54
AF9
A
1177 1186Right-handed alpha
Helix 55
AG1
A
1191 1195Right-handed 310
Helix 56
AG2
A
1207 1209Right-handed 310
Helix 57
AG3
A
1229 1240Right-handed alpha
Helix 58
AG4
A
1248 1262Right-handed alpha
Helix 59
AG5
A
1263 1266Right-handed 310
Helix 60
AG6
A
1268 1281Right-handed alpha
Helix 61
AG7
A
1283 1297Right-handed alpha
Helix 62
AG8
A
1301 1313Right-handed alpha
Helix 63
AG9
A
1314 1316Right-handed 310
Helix 64
AH1
A
1338 1344Right-handed 310
Helix 65
AH2
C
4 19Right-handed alpha
Helix 66
AH3
C
30 35Right-handed alpha
Helix 67
AH4
C
108 121Right-handed alpha
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There are 10 sheets in PDB entry 6MCC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
954 957first strand
Strand 2
A
758 763parallel
Strand 3
A
6 11parallel
Strand 4
A
15 21anti-parallel
Strand 5
A
49 52anti-parallel
Strand 6
A
1093 1096parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
29 33first strand
Strand 2
A
42 46anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
35 36first strand
Strand 2
A
1357 1361parallel
Strand 3
A
1346 1350anti-parallel
Strand 4
A
1203 1206anti-parallel
Strand 5
A
1210 1216anti-parallel
Strand 6
A
1219 1222anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
507 509first strand
Strand 2
A
659 663anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
538 539first strand
Strand 2
A
528 530anti-parallel
Strand 3
A
579 580anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
837 840first strand
Strand 2
A
855 858anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1064 1065first strand
Strand 2
A
1072 1074anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1156 1167first strand
Strand 2
A
1139 1151anti-parallel
Strand 3
A
1196 1199anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
69 72first strand
Strand 2
C
82 90anti-parallel
Strand 3
C
75 78anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
69 72first strand
Strand 2
C
82 90anti-parallel
Strand 3
C
39 43anti-parallel
Strand 4
C
127 128anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il