Analysis of interatomic Contacts of Structural Units in PDB entry:
6MCP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MCP entry

There are 4 chains in PDB entry 6MCP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 10ASN 529
B
 ASN 31SER 213
C
 LYS 11ASN 529
D
 ALA 32SER 88
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 6MCP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 23Right-handed alpha
Helix 2
AA2
A
27 43Right-handed alpha
Helix 3
AA3
A
48 56Right-handed alpha
Helix 4
AA4
A
62 70Right-handed alpha
Helix 5
AA5
A
77 91Right-handed alpha
Helix 6
AA6
A
105 120Right-handed alpha
Helix 7
AA7
A
121 124Right-handed 310
Helix 8
AA8
A
125 143Right-handed alpha
Helix 9
AA9
A
143 160Right-handed alpha
Helix 10
AB1
A
160 169Right-handed alpha
Helix 11
AB2
A
216 223Right-handed alpha
Helix 12
AB3
A
224 231Right-handed 310
Helix 13
AB4
A
264 272Right-handed alpha
Helix 14
AB5
A
273 275Right-handed 310
Helix 15
AB6
A
276 278Right-handed 310
Helix 16
AB7
A
279 301Right-handed alpha
Helix 17
AB8
A
309 313Right-handed 310
Helix 18
AB9
A
335 339Right-handed 310
Helix 19
AC1
A
347 352Right-handed alpha
Helix 20
AC2
A
358 360Right-handed 310
Helix 21
AC3
A
367 371Right-handed 310
Helix 22
AC4
A
375 395Right-handed alpha
Helix 23
AC5
A
410 415Right-handed 310
Helix 24
AC6
A
419 433Right-handed alpha
Helix 25
AC7
A
436 440Right-handed 310
Helix 26
AC8
A
442 451Right-handed alpha
Helix 27
AC9
A
456 468Right-handed alpha
Helix 28
AD1
A
469 474Right-handed 310
Helix 29
AD2
A
475 487Right-handed alpha
Helix 30
AD3
A
492 508Right-handed alpha
Helix 31
AD4
A
513 528Right-handed alpha
Helix 32
AD5
B
40 45Right-handed alpha
Helix 33
AD6
B
52 76Right-handed alpha
Helix 34
AD7
B
110 128Right-handed alpha
Helix 35
AD8
B
143 173Right-handed alpha
Helix 36
AD9
B
175 194Right-handed alpha
Helix 37
AE1
B
197 202Right-handed alpha
Helix 38
AE2
B
204 213Right-handed alpha
Helix 39
AE3
C
13 23Right-handed alpha
Helix 40
AE4
C
27 43Right-handed alpha
Helix 41
AE5
C
48 56Right-handed alpha
Helix 42
AE6
C
62 70Right-handed alpha
Helix 43
AE7
C
77 91Right-handed alpha
Helix 44
AE8
C
105 120Right-handed alpha
Helix 45
AE9
C
121 124Right-handed 310
Helix 46
AF1
C
125 143Right-handed alpha
Helix 47
AF2
C
143 160Right-handed alpha
Helix 48
AF3
C
160 170Right-handed alpha
Helix 49
AF4
C
212 223Right-handed alpha
Helix 50
AF5
C
224 231Right-handed 310
Helix 51
AF6
C
264 272Right-handed alpha
Helix 52
AF7
C
273 275Right-handed 310
Helix 53
AF8
C
276 278Right-handed 310
Helix 54
AF9
C
279 301Right-handed alpha
Helix 55
AG1
C
309 313Right-handed 310
Helix 56
AG2
C
335 339Right-handed 310
Helix 57
AG3
C
347 352Right-handed alpha
Helix 58
AG4
C
367 371Right-handed 310
Helix 59
AG5
C
375 395Right-handed alpha
Helix 60
AG6
C
410 415Right-handed 310
Helix 61
AG7
C
419 433Right-handed alpha
Helix 62
AG8
C
436 440Right-handed 310
Helix 63
AG9
C
442 451Right-handed alpha
Helix 64
AH1
C
456 468Right-handed alpha
Helix 65
AH2
C
469 474Right-handed 310
Helix 66
AH3
C
475 487Right-handed alpha
Helix 67
AH4
C
492 508Right-handed alpha
Helix 68
AH5
C
513 528Right-handed alpha
Helix 69
AH6
D
40 45Right-handed alpha
Helix 70
AH7
D
52 76Right-handed alpha
Helix 71
AH8
D
110 128Right-handed alpha
Helix 72
AH9
D
143 173Right-handed alpha
Helix 73
AI1
D
175 194Right-handed alpha
Helix 74
AI2
D
197 202Right-handed alpha
Helix 75
AI3
D
204 211Right-handed alpha
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There are 6 sheets in PDB entry 6MCP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 189first strand
Strand 2
C
194 197anti-parallel
Strand 3
C
206 210anti-parallel
Strand 4
C
249 258anti-parallel
Strand 5
C
234 243anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 210first strand
Strand 2
A
249 258anti-parallel
Strand 3
A
234 243anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 316first strand
Strand 2
A
319 321anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 356first strand
Strand 2
A
362 365anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
314 316first strand
Strand 2
C
319 321anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
354 356first strand
Strand 2
C
362 365anti-parallel
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