Analysis of interatomic Contacts of Structural Units in PDB entry:
6MCW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MCW entry

There is 1 chain in PDB entry 6MCW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 4ASP 449
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6MCW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 28Right-handed alpha
Helix 2
AA2
A
28 41Right-handed alpha
Helix 3
AA3
A
58 68Right-handed alpha
Helix 4
AA4
A
75 80Right-handed 310
Helix 5
AA5
A
82 87Right-handed alpha
Helix 6
AA6
A
95 107Right-handed alpha
Helix 7
AA7
A
108 110Right-handed 310
Helix 8
AA8
A
114 131Right-handed alpha
Helix 9
AA9
A
141 158Right-handed alpha
Helix 10
AB1
A
159 164Right-handed alpha
Helix 11
AB2
A
166 180Right-handed alpha
Helix 12
AB3
A
182 188Right-handed alpha
Helix 13
AB4
A
193 220Right-handed alpha
Helix 14
AB5
A
226 233Right-handed alpha
Helix 15
AB6
A
243 275Right-handed alpha
Helix 16
AB7
A
276 295Right-handed alpha
Helix 17
AB8
A
298 303Right-handed alpha
Helix 18
AB9
A
305 319Right-handed alpha
Helix 19
AC1
A
349 354Right-handed alpha
Helix 20
AC2
A
367 372Right-handed 310
Helix 21
AC3
A
389 393Right-handed 310
Helix 22
AC4
A
396 414Right-handed alpha
Helix 23
AC5
A
422 426Right-handed 310
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There are 4 sheets in PDB entry 6MCW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
53 56anti-parallel
Strand 3
A
345 348parallel
Strand 4
A
325 329anti-parallel
Strand 5
A
73 74anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 140first strand
Strand 2
A
442 447anti-parallel
Strand 3
A
415 419anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 335first strand
Strand 2
A
338 340anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 429first strand
Strand 2
A
436 437anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il