Analysis of interatomic Contacts of Structural Units in PDB entry:
6MDM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MDM entry

There are 11 chains in PDB entry 6MDM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1ALA 738
B
MET 1ALA 738
C
MET 1ALA 738
D
MET 1ALA 738
E
ASN 210ALA 738
F
GLY 219ALA 738
H
MET 1GLY 204
I
ALA 191LYS 256
J
ASN 29TRP 89
K
ALA 8ASP 293
L
ALA 8ASP 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are186 helices in PDB entry 6MDM. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
13 18Right-handed 310
Helix 2
AA2
A
63 71Right-handed alpha
Helix 3
AA3
A
114 125Right-handed alpha
Helix 4
AA4
A
223 234Right-handed alpha
Helix 5
AA5
A
241 249Right-handed alpha
Helix 6
AA6
A
266 277Right-handed alpha
Helix 7
AA7
A
296 317Right-handed alpha
Helix 8
AA8
A
349 360Right-handed alpha
Helix 9
AA9
A
399 418Right-handed alpha
Helix 10
AB1
A
425 432Right-handed alpha
Helix 11
AB2
A
437 456Right-handed alpha
Helix 12
AB3
A
481 486Right-handed alpha
Helix 13
AB4
A
498 503Right-handed alpha
Helix 14
AB5
A
511 530Right-handed alpha
Helix 15
AB6
A
548 560Right-handed alpha
Helix 16
AB7
A
569 574Right-handed alpha
Helix 17
AB8
A
577 594Right-handed alpha
Helix 18
AB9
A
604 609Right-handed alpha
Helix 19
AC1
A
619 632Right-handed alpha
Helix 20
AC2
A
649 655Right-handed alpha
Helix 21
AC3
A
672 684Right-handed alpha
Helix 22
AC4
A
687 698Right-handed alpha
Helix 23
AC5
A
706 719Right-handed alpha
Helix 24
AC6
A
721 734Right-handed alpha
Helix 25
AC7
B
15 19Right-handed 310
Helix 26
AC8
B
63 68Right-handed alpha
Helix 27
AC9
B
86 91Right-handed alpha
Helix 28
AD1
B
114 125Right-handed alpha
Helix 29
AD2
B
223 240Right-handed alpha
Helix 30
AD3
B
241 249Right-handed alpha
Helix 31
AD4
B
266 277Right-handed alpha
Helix 32
AD5
B
296 316Right-handed alpha
Helix 33
AD6
B
329 334Right-handed alpha
Helix 34
AD7
B
348 359Right-handed alpha
Helix 35
AD8
B
375 379Right-handed 310
Helix 36
AD9
B
380 385Right-handed alpha
Helix 37
AE1
B
399 417Right-handed alpha
Helix 38
AE2
B
425 433Right-handed alpha
Helix 39
AE3
B
439 455Right-handed alpha
Helix 40
AE4
B
481 486Right-handed alpha
Helix 41
AE5
B
498 502Right-handed 310
Helix 42
AE6
B
511 530Right-handed alpha
Helix 43
AE7
B
548 560Right-handed alpha
Helix 44
AE8
B
577 593Right-handed alpha
Helix 45
AE9
B
604 609Right-handed alpha
Helix 46
AF1
B
619 630Right-handed alpha
Helix 47
AF2
B
649 655Right-handed alpha
Helix 48
AF3
B
673 684Right-handed alpha
Helix 49
AF4
B
688 698Right-handed alpha
Helix 50
AF5
B
706 719Right-handed alpha
Helix 51
AF6
B
721 735Right-handed alpha
Helix 52
AF7
C
15 19Right-handed 310
Helix 53
AF8
C
63 71Right-handed alpha
Helix 54
AF9
C
86 91Right-handed alpha
Helix 55
AG1
C
103 107Right-handed 310
Helix 56
AG2
C
114 125Right-handed alpha
Helix 57
AG3
C
197 201Right-handed 310
Helix 58
AG4
C
223 236Right-handed alpha
Helix 59
AG5
C
241 249Right-handed alpha
Helix 60
AG6
C
265 276Right-handed alpha
Helix 61
AG7
C
296 317Right-handed alpha
Helix 62
AG8
C
347 359Right-handed alpha
Helix 63
AG9
C
375 379Right-handed 310
Helix 64
AH1
C
380 385Right-handed alpha
Helix 65
AH2
C
399 417Right-handed alpha
Helix 66
AH3
C
425 433Right-handed alpha
Helix 67
AH4
C
438 457Right-handed alpha
Helix 68
AH5
C
480 486Right-handed alpha
Helix 69
AH6
C
497 503Right-handed alpha
Helix 70
AH7
C
511 531Right-handed alpha
Helix 71
AH8
C
549 561Right-handed alpha
Helix 72
AH9
C
577 593Right-handed alpha
Helix 73
AI1
C
604 609Right-handed alpha
Helix 74
AI2
C
619 632Right-handed alpha
Helix 75
AI3
C
649 655Right-handed alpha
Helix 76
AI4
C
672 684Right-handed alpha
Helix 77
AI5
C
690 699Right-handed alpha
Helix 78
AI6
C
706 719Right-handed alpha
Helix 79
AI7
C
721 738Right-handed alpha
Helix 80
AI8
D
14 19Right-handed 310
Helix 81
AI9
D
63 71Right-handed alpha
Helix 82
AJ1
D
114 125Right-handed alpha
Helix 83
AJ2
D
223 235Right-handed alpha
Helix 84
AJ3
D
235 240Right-handed alpha
Helix 85
AJ4
D
242 248Right-handed alpha
Helix 86
AJ5
D
265 276Right-handed alpha
Helix 87
AJ6
D
298 316Right-handed alpha
Helix 88
AJ7
D
329 334Right-handed alpha
Helix 89
AJ8
D
345 348Right-handed 310
Helix 90
AJ9
D
349 359Right-handed alpha
Helix 91
AK1
D
380 384Right-handed 310
Helix 92
AK2
D
401 417Right-handed alpha
Helix 93
AK3
D
425 433Right-handed alpha
Helix 94
AK4
D
438 458Right-handed alpha
Helix 95
AK5
D
481 489Right-handed alpha
Helix 96
AK6
D
511 531Right-handed alpha
Helix 97
AK7
D
548 561Right-handed alpha
Helix 98
AK8
D
577 594Right-handed alpha
Helix 99
AK9
D
604 609Right-handed alpha
Helix 100
AL1
D
619 631Right-handed alpha
Helix 101
AL2
D
651 655Right-handed 310
Helix 102
AL3
D
672 684Right-handed alpha
Helix 103
AL4
D
687 699Right-handed alpha
Helix 104
AL5
D
706 719Right-handed alpha
Helix 105
AL6
D
721 737Right-handed alpha
Helix 106
AL7
E
216 220Right-handed 310
Helix 107
AL8
E
223 236Right-handed alpha
Helix 108
AL9
E
265 277Right-handed alpha
Helix 109
AM1
E
286 291Right-handed 310
Helix 110
AM2
E
296 317Right-handed alpha
Helix 111
AM3
E
329 334Right-handed alpha
Helix 112
AM4
E
351 360Right-handed alpha
Helix 113
AM5
E
376 384Right-handed alpha
Helix 114
AM6
E
399 416Right-handed alpha
Helix 115
AM7
E
425 433Right-handed alpha
Helix 116
AM8
E
438 455Right-handed alpha
Helix 117
AM9
E
479 489Right-handed alpha
Helix 118
AN1
E
511 531Right-handed alpha
Helix 119
AN2
E
549 561Right-handed alpha
Helix 120
AN3
E
569 574Right-handed 310
Helix 121
AN4
E
577 595Right-handed alpha
Helix 122
AN5
E
604 609Right-handed alpha
Helix 123
AN6
E
619 632Right-handed alpha
Helix 124
AN7
E
649 655Right-handed alpha
Helix 125
AN8
E
672 684Right-handed alpha
Helix 126
AN9
E
687 699Right-handed alpha
Helix 127
AO1
E
706 719Right-handed alpha
Helix 128
AO2
E
725 734Right-handed alpha
Helix 129
AO3
F
224 239Right-handed alpha
Helix 130
AO4
F
265 278Right-handed alpha
Helix 131
AO5
F
299 316Right-handed alpha
Helix 132
AO6
F
348 359Right-handed alpha
Helix 133
AO7
F
399 411Right-handed alpha
Helix 134
AO8
F
427 432Right-handed alpha
Helix 135
AO9
F
433 436Right-handed 310
Helix 136
AP1
F
443 454Right-handed alpha
Helix 137
AP2
F
499 503Right-handed 310
Helix 138
AP3
F
511 530Right-handed alpha
Helix 139
AP4
F
549 560Right-handed alpha
Helix 140
AP5
F
577 595Right-handed alpha
Helix 141
AP6
F
604 609Right-handed alpha
Helix 142
AP7
F
619 632Right-handed alpha
Helix 143
AP8
F
649 655Right-handed alpha
Helix 144
AP9
F
672 684Right-handed alpha
Helix 145
AQ1
F
687 696Right-handed alpha
Helix 146
AQ2
F
706 720Right-handed alpha
Helix 147
AQ3
F
724 736Right-handed alpha
Helix 148
AQ4
H
19 22Right-handed 310
Helix 149
AQ5
H
23 35Right-handed alpha
Helix 150
AQ6
H
36 72Right-handed alpha
Helix 151
AQ7
H
73 83Right-handed alpha
Helix 152
AQ8
H
142 201Right-handed alpha
Helix 153
AQ9
I
192 237Right-handed alpha
Helix 154
AR1
I
238 252Right-handed alpha
Helix 155
AR2
J
30 86Right-handed alpha
Helix 156
AR3
K
11 19Right-handed alpha
Helix 157
AR4
K
34 55Right-handed alpha
Helix 158
AR5
K
57 72Right-handed alpha
Helix 159
AR6
K
73 75Right-handed 310
Helix 160
AR7
K
80 95Right-handed alpha
Helix 161
AR8
K
99 114Right-handed alpha
Helix 162
AR9
K
117 134Right-handed alpha
Helix 163
AS1
K
137 154Right-handed alpha
Helix 164
AS2
K
157 176Right-handed alpha
Helix 165
AS3
K
178 195Right-handed alpha
Helix 166
AS4
K
201 212Right-handed alpha
Helix 167
AS5
K
219 226Right-handed alpha
Helix 168
AS6
K
234 238Right-handed 310
Helix 169
AS7
K
241 253Right-handed alpha
Helix 170
AS8
K
258 270Right-handed alpha
Helix 171
AS9
K
273 291Right-handed alpha
Helix 172
AT1
L
10 21Right-handed alpha
Helix 173
AT2
L
34 55Right-handed alpha
Helix 174
AT3
L
60 74Right-handed alpha
Helix 175
AT4
L
78 93Right-handed alpha
Helix 176
AT5
L
98 115Right-handed alpha
Helix 177
AT6
L
116 134Right-handed alpha
Helix 178
AT7
L
137 155Right-handed alpha
Helix 179
AT8
L
157 170Right-handed alpha
Helix 180
AT9
L
171 173Right-handed 310
Helix 181
AU1
L
177 190Right-handed alpha
Helix 182
AU2
L
198 209Right-handed alpha
Helix 183
AU3
L
223 228Right-handed alpha
Helix 184
AU4
L
240 254Right-handed alpha
Helix 185
AU5
L
255 270Right-handed alpha
Helix 186
AU6
L
273 292Right-handed alpha
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There are 35 sheets in PDB entry 6MDM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
4 10first strand
Strand 2
A
60 62parallel
Strand 3
A
22 24anti-parallel
Strand 4
A
44 51parallel
Strand 5
A
34 38anti-parallel
Strand 6
A
77 82anti-parallel
Strand 7
A
4 10anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
100 101first strand
Strand 2
A
143 154anti-parallel
Strand 3
A
139 140anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
135 136first strand
Strand 2
A
143 154anti-parallel
Strand 3
A
92 97anti-parallel
Strand 4
A
182 185parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
111 113first strand
Strand 2
A
194 196parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
128 131first strand
Strand 2
A
174 177anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
279 285first strand
Strand 2
A
322 327parallel
Strand 3
A
367 373parallel
Strand 4
A
255 259parallel
Strand 5
A
391 394parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
564 568first strand
Strand 2
A
597 602parallel
Strand 3
A
639 644parallel
Strand 4
A
536 542parallel
Strand 5
A
663 666parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
4 10first strand
Strand 2
B
60 62parallel
Strand 3
B
21 24anti-parallel
Strand 4
B
43 51parallel
Strand 5
B
34 40anti-parallel
Strand 6
B
77 83anti-parallel
Strand 7
B
4 10anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
135 140first strand
Strand 2
B
143 153anti-parallel
Strand 3
B
171 172anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
135 140first strand
Strand 2
B
143 153anti-parallel
Strand 3
B
94 100anti-parallel
Strand 4
B
182 187parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
112 113first strand
Strand 2
B
195 196parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
128 131first strand
Strand 2
B
174 177anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
283 285first strand
Strand 2
B
325 327parallel
Strand 3
B
369 373parallel
Strand 4
B
255 259parallel
Strand 5
B
392 394parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
564 568first strand
Strand 2
B
597 602parallel
Strand 3
B
639 646parallel
Strand 4
B
539 542parallel
Strand 5
B
663 666parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
670 672first strand
Strand 2
B
702 705anti-parallel
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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
4 10first strand
Strand 2
C
60 62parallel
Strand 3
C
22 24anti-parallel
Strand 4
C
43 51parallel
Strand 5
C
34 40anti-parallel
Strand 6
C
77 82anti-parallel
Strand 7
C
4 10anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
135 139first strand
Strand 2
C
144 154anti-parallel
Strand 3
C
170 172anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
135 139first strand
Strand 2
C
144 154anti-parallel
Strand 3
C
94 99anti-parallel
Strand 4
C
182 187parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
111 113first strand
Strand 2
C
194 196parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
129 131first strand
Strand 2
C
174 176anti-parallel
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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
283 284first strand
Strand 2
C
323 326parallel
Strand 3
C
367 373parallel
Strand 4
C
257 259parallel
Strand 5
C
392 394parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
597 601first strand
Strand 2
C
639 646parallel
Strand 3
C
536 542parallel
Strand 4
C
663 666parallel
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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
4 10first strand
Strand 2
D
60 62parallel
Strand 3
D
21 24anti-parallel
Strand 4
D
44 51parallel
Strand 5
D
34 38anti-parallel
Strand 6
D
77 82anti-parallel
Strand 7
D
4 10anti-parallel
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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
135 136first strand
Strand 2
D
146 154anti-parallel
Strand 3
D
170 171anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
135 136first strand
Strand 2
D
146 154anti-parallel
Strand 3
D
92 100anti-parallel
Strand 4
D
182 187parallel
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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
111 113first strand
Strand 2
D
194 196parallel
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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
129 131first strand
Strand 2
D
174 176anti-parallel
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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
139 140first strand
Strand 2
D
143 144anti-parallel
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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
283 284first strand
Strand 2
D
323 326parallel
Strand 3
D
367 373parallel
Strand 4
D
255 259parallel
Strand 5
D
392 394parallel
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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
565 568first strand
Strand 2
D
597 602parallel
Strand 3
D
639 646parallel
Strand 4
D
536 542parallel
Strand 5
D
663 666parallel
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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
258 259first strand
Strand 2
E
393 394parallel
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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
283 285first strand
Strand 2
E
324 328parallel
Strand 3
E
368 372parallel
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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
540 542first strand
Strand 2
E
641 646parallel
Strand 3
E
598 602parallel
Strand 4
E
564 568parallel
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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
258 259first strand
Strand 2
F
368 373parallel
Strand 3
F
324 328parallel
Strand 4
F
285 286parallel
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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
564 568first strand
Strand 2
F
598 602parallel
Strand 3
F
640 646parallel
Strand 4
F
536 542parallel
Strand 5
F
662 666parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il