Analysis of interatomic Contacts of Structural Units in PDB entry:
6MDN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MDN entry

There are 11 chains in PDB entry 6MDN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 211	ALA 738
B	MET 1	ALA 738
C	MET 1	ALA 738
D	MET 1	ALA 738
E	MET 1	ALA 738
F	GLY 219	ALA 738
H	MET 1	GLY 204
I	ALA 191	LYS 256
J	ASN 29	TRP 89
K	ALA 8	ASP 293
L	ALA 8	ASP 293

There are187 helices in PDB entry 6MDN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	223	234	Right-handed alpha
Helix 2	AA2	A	241	249	Right-handed alpha
Helix 3	AA3	A	266	277	Right-handed alpha
Helix 4	AA4	A	294	317	Right-handed alpha
Helix 5	AA5	A	318	320	Right-handed 310
Helix 6	AA6	A	349	359	Right-handed alpha
Helix 7	AA7	A	399	418	Right-handed alpha
Helix 8	AA8	A	425	432	Right-handed alpha
Helix 9	AA9	A	437	456	Right-handed alpha
Helix 10	AB1	A	481	486	Right-handed alpha
Helix 11	AB2	A	498	503	Right-handed alpha
Helix 12	AB3	A	511	530	Right-handed alpha
Helix 13	AB4	A	548	560	Right-handed alpha
Helix 14	AB5	A	569	574	Right-handed alpha
Helix 15	AB6	A	579	594	Right-handed alpha
Helix 16	AB7	A	604	609	Right-handed alpha
Helix 17	AB8	A	619	631	Right-handed alpha
Helix 18	AB9	A	649	655	Right-handed alpha
Helix 19	AC1	A	672	684	Right-handed alpha
Helix 20	AC2	A	687	698	Right-handed alpha
Helix 21	AC3	A	706	719	Right-handed alpha
Helix 22	AC4	A	721	734	Right-handed alpha
Helix 23	AC5	B	14	18	Right-handed 310
Helix 24	AC6	B	63	71	Right-handed alpha
Helix 25	AC7	B	114	125	Right-handed alpha
Helix 26	AC8	B	223	240	Right-handed alpha
Helix 27	AC9	B	241	249	Right-handed alpha
Helix 28	AD1	B	266	277	Right-handed alpha
Helix 29	AD2	B	296	316	Right-handed alpha
Helix 30	AD3	B	329	334	Right-handed alpha
Helix 31	AD4	B	348	359	Right-handed alpha
Helix 32	AD5	B	375	379	Right-handed 310
Helix 33	AD6	B	380	385	Right-handed alpha
Helix 34	AD7	B	399	417	Right-handed alpha
Helix 35	AD8	B	425	433	Right-handed alpha
Helix 36	AD9	B	437	455	Right-handed alpha
Helix 37	AE1	B	481	486	Right-handed alpha
Helix 38	AE2	B	498	502	Right-handed 310
Helix 39	AE3	B	511	530	Right-handed alpha
Helix 40	AE4	B	548	560	Right-handed alpha
Helix 41	AE5	B	569	573	Right-handed 310
Helix 42	AE6	B	577	593	Right-handed alpha
Helix 43	AE7	B	604	609	Right-handed alpha
Helix 44	AE8	B	619	630	Right-handed alpha
Helix 45	AE9	B	649	655	Right-handed alpha
Helix 46	AF1	B	673	684	Right-handed alpha
Helix 47	AF2	B	687	698	Right-handed alpha
Helix 48	AF3	B	706	719	Right-handed alpha
Helix 49	AF4	B	721	735	Right-handed alpha
Helix 50	AF5	C	15	19	Right-handed 310
Helix 51	AF6	C	63	68	Right-handed alpha
Helix 52	AF7	C	86	91	Right-handed alpha
Helix 53	AF8	C	114	125	Right-handed alpha
Helix 54	AF9	C	223	236	Right-handed alpha
Helix 55	AG1	C	241	249	Right-handed alpha
Helix 56	AG2	C	265	277	Right-handed alpha
Helix 57	AG3	C	296	307	Right-handed alpha
Helix 58	AG4	C	309	317	Right-handed alpha
Helix 59	AG5	C	347	359	Right-handed alpha
Helix 60	AG6	C	375	379	Right-handed 310
Helix 61	AG7	C	380	385	Right-handed alpha
Helix 62	AG8	C	399	417	Right-handed alpha
Helix 63	AG9	C	425	433	Right-handed alpha
Helix 64	AH1	C	438	457	Right-handed alpha
Helix 65	AH2	C	480	486	Right-handed alpha
Helix 66	AH3	C	496	503	Right-handed alpha
Helix 67	AH4	C	511	531	Right-handed alpha
Helix 68	AH5	C	549	561	Right-handed alpha
Helix 69	AH6	C	577	593	Right-handed alpha
Helix 70	AH7	C	604	609	Right-handed alpha
Helix 71	AH8	C	619	632	Right-handed alpha
Helix 72	AH9	C	649	655	Right-handed alpha
Helix 73	AI1	C	672	684	Right-handed alpha
Helix 74	AI2	C	687	699	Right-handed alpha
Helix 75	AI3	C	706	719	Right-handed alpha
Helix 76	AI4	C	721	738	Right-handed alpha
Helix 77	AI5	D	15	19	Right-handed 310
Helix 78	AI6	D	63	71	Right-handed alpha
Helix 79	AI7	D	114	125	Right-handed alpha
Helix 80	AI8	D	223	235	Right-handed alpha
Helix 81	AI9	D	235	240	Right-handed alpha
Helix 82	AJ1	D	242	248	Right-handed alpha
Helix 83	AJ2	D	265	276	Right-handed alpha
Helix 84	AJ3	D	286	291	Right-handed 310
Helix 85	AJ4	D	296	316	Right-handed alpha
Helix 86	AJ5	D	345	348	Right-handed 310
Helix 87	AJ6	D	349	359	Right-handed alpha
Helix 88	AJ7	D	380	384	Right-handed 310
Helix 89	AJ8	D	399	417	Right-handed alpha
Helix 90	AJ9	D	425	432	Right-handed alpha
Helix 91	AK1	D	438	458	Right-handed alpha
Helix 92	AK2	D	481	489	Right-handed alpha
Helix 93	AK3	D	511	531	Right-handed alpha
Helix 94	AK4	D	548	561	Right-handed alpha
Helix 95	AK5	D	577	594	Right-handed alpha
Helix 96	AK6	D	604	609	Right-handed alpha
Helix 97	AK7	D	619	631	Right-handed alpha
Helix 98	AK8	D	634	638	Right-handed 310
Helix 99	AK9	D	651	656	Right-handed alpha
Helix 100	AL1	D	656	661	Right-handed alpha
Helix 101	AL2	D	672	684	Right-handed alpha
Helix 102	AL3	D	687	699	Right-handed alpha
Helix 103	AL4	D	706	720	Right-handed alpha
Helix 104	AL5	D	723	737	Right-handed alpha
Helix 105	AL6	E	14	19	Right-handed 310
Helix 106	AL7	E	63	71	Right-handed alpha
Helix 107	AL8	E	114	125	Right-handed alpha
Helix 108	AL9	E	223	239	Right-handed alpha
Helix 109	AM1	E	265	277	Right-handed alpha
Helix 110	AM2	E	286	291	Right-handed 310
Helix 111	AM3	E	296	317	Right-handed alpha
Helix 112	AM4	E	329	334	Right-handed alpha
Helix 113	AM5	E	351	359	Right-handed alpha
Helix 114	AM6	E	375	378	Right-handed 310
Helix 115	AM7	E	379	384	Right-handed alpha
Helix 116	AM8	E	399	411	Right-handed alpha
Helix 117	AM9	E	411	416	Right-handed alpha
Helix 118	AN1	E	425	433	Right-handed alpha
Helix 119	AN2	E	437	456	Right-handed alpha
Helix 120	AN3	E	479	489	Right-handed alpha
Helix 121	AN4	E	511	531	Right-handed alpha
Helix 122	AN5	E	548	561	Right-handed alpha
Helix 123	AN6	E	569	574	Right-handed 310
Helix 124	AN7	E	577	584	Right-handed alpha
Helix 125	AN8	E	584	595	Right-handed alpha
Helix 126	AN9	E	604	609	Right-handed alpha
Helix 127	AO1	E	619	632	Right-handed alpha
Helix 128	AO2	E	649	655	Right-handed alpha
Helix 129	AO3	E	672	684	Right-handed alpha
Helix 130	AO4	E	687	699	Right-handed alpha
Helix 131	AO5	E	706	719	Right-handed alpha
Helix 132	AO6	E	725	734	Right-handed alpha
Helix 133	AO7	F	224	239	Right-handed alpha
Helix 134	AO8	F	265	278	Right-handed alpha
Helix 135	AO9	F	297	316	Right-handed alpha
Helix 136	AP1	F	348	360	Right-handed alpha
Helix 137	AP2	F	399	411	Right-handed alpha
Helix 138	AP3	F	427	432	Right-handed alpha
Helix 139	AP4	F	443	448	Right-handed alpha
Helix 140	AP5	F	449	454	Right-handed alpha
Helix 141	AP6	F	498	503	Right-handed alpha
Helix 142	AP7	F	511	530	Right-handed alpha
Helix 143	AP8	F	549	560	Right-handed alpha
Helix 144	AP9	F	577	595	Right-handed alpha
Helix 145	AQ1	F	604	609	Right-handed alpha
Helix 146	AQ2	F	619	631	Right-handed alpha
Helix 147	AQ3	F	649	656	Right-handed alpha
Helix 148	AQ4	F	672	684	Right-handed alpha
Helix 149	AQ5	F	687	696	Right-handed alpha
Helix 150	AQ6	F	706	720	Right-handed alpha
Helix 151	AQ7	F	724	736	Right-handed alpha
Helix 152	AQ8	H	21	35	Right-handed alpha
Helix 153	AQ9	H	36	83	Right-handed alpha
Helix 154	AR1	H	142	202	Right-handed alpha
Helix 155	AR2	I	192	237	Right-handed alpha
Helix 156	AR3	I	238	255	Right-handed alpha
Helix 157	AR4	J	31	86	Right-handed alpha
Helix 158	AR5	K	10	17	Right-handed alpha
Helix 159	AR6	K	36	54	Right-handed alpha
Helix 160	AR7	K	57	77	Right-handed alpha
Helix 161	AR8	K	80	95	Right-handed alpha
Helix 162	AR9	K	99	113	Right-handed alpha
Helix 163	AS1	K	117	134	Right-handed alpha
Helix 164	AS2	K	137	154	Right-handed alpha
Helix 165	AS3	K	157	176	Right-handed alpha
Helix 166	AS4	K	178	195	Right-handed alpha
Helix 167	AS5	K	200	212	Right-handed alpha
Helix 168	AS6	K	219	228	Right-handed alpha
Helix 169	AS7	K	234	239	Right-handed 310
Helix 170	AS8	K	241	253	Right-handed alpha
Helix 171	AS9	K	255	270	Right-handed alpha
Helix 172	AT1	K	273	292	Right-handed alpha
Helix 173	AT2	L	9	21	Right-handed alpha
Helix 174	AT3	L	34	55	Right-handed alpha
Helix 175	AT4	L	59	74	Right-handed alpha
Helix 176	AT5	L	78	95	Right-handed alpha
Helix 177	AT6	L	99	112	Right-handed alpha
Helix 178	AT7	L	116	134	Right-handed alpha
Helix 179	AT8	L	137	155	Right-handed alpha
Helix 180	AT9	L	157	171	Right-handed alpha
Helix 181	AU1	L	177	194	Right-handed alpha
Helix 182	AU2	L	198	200	Right-handed 310
Helix 183	AU3	L	201	212	Right-handed alpha
Helix 184	AU4	L	219	228	Right-handed alpha
Helix 185	AU5	L	240	252	Right-handed alpha
Helix 186	AU6	L	256	268	Right-handed alpha
Helix 187	AU7	L	273	292	Right-handed alpha

There are 34 sheets in PDB entry 6MDN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	285	first strand
Strand 2	A	323	327	parallel
Strand 3	A	367	373	parallel
Strand 4	A	255	259	parallel
Strand 5	A	391	394	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	565	568	first strand
Strand 2	A	597	602	parallel
Strand 3	A	639	644	parallel
Strand 4	A	536	542	parallel
Strand 5	A	663	666	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	10	first strand
Strand 2	B	59	62	parallel
Strand 3	B	22	24	anti-parallel
Strand 4	B	44	51	parallel
Strand 5	B	34	38	anti-parallel
Strand 6	B	77	83	anti-parallel
Strand 7	B	4	10	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	140	first strand
Strand 2	B	143	154	anti-parallel
Strand 3	B	92	101	anti-parallel
Strand 4	B	182	187	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	113	first strand
Strand 2	B	194	196	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	131	first strand
Strand 2	B	174	176	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	285	first strand
Strand 2	B	325	327	parallel
Strand 3	B	369	373	parallel
Strand 4	B	255	259	parallel
Strand 5	B	391	394	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	565	568	first strand
Strand 2	B	597	602	parallel
Strand 3	B	639	646	parallel
Strand 4	B	538	542	parallel
Strand 5	B	663	666	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	670	672	first strand
Strand 2	B	702	705	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	10	first strand
Strand 2	C	60	62	parallel
Strand 3	C	21	24	anti-parallel
Strand 4	C	43	51	parallel
Strand 5	C	34	40	anti-parallel
Strand 6	C	77	82	anti-parallel
Strand 7	C	4	10	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	140	first strand
Strand 2	C	143	154	anti-parallel
Strand 3	C	92	101	anti-parallel
Strand 4	C	182	187	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	113	first strand
Strand 2	C	194	196	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	131	first strand
Strand 2	C	174	177	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	284	first strand
Strand 2	C	323	326	parallel
Strand 3	C	367	373	parallel
Strand 4	C	257	259	parallel
Strand 5	C	392	394	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	564	565	first strand
Strand 2	C	597	601	parallel
Strand 3	C	639	646	parallel
Strand 4	C	536	542	parallel
Strand 5	C	663	666	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	10	first strand
Strand 2	D	59	62	parallel
Strand 3	D	21	24	anti-parallel
Strand 4	D	43	51	parallel
Strand 5	D	34	40	anti-parallel
Strand 6	D	77	82	anti-parallel
Strand 7	D	4	10	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	136	first strand
Strand 2	D	145	154	anti-parallel
Strand 3	D	170	172	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	136	first strand
Strand 2	D	145	154	anti-parallel
Strand 3	D	92	101	anti-parallel
Strand 4	D	182	187	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	113	first strand
Strand 2	D	195	196	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	131	first strand
Strand 2	D	174	176	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	284	first strand
Strand 2	D	323	326	parallel
Strand 3	D	367	373	parallel
Strand 4	D	255	259	parallel
Strand 5	D	392	394	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	565	568	first strand
Strand 2	D	597	602	parallel
Strand 3	D	639	646	parallel
Strand 4	D	536	542	parallel
Strand 5	D	663	666	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	611	612	first strand
Strand 2	D	617	618	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	10	first strand
Strand 2	E	60	62	parallel
Strand 3	E	21	24	anti-parallel
Strand 4	E	44	51	parallel
Strand 5	E	34	38	anti-parallel
Strand 6	E	77	82	anti-parallel
Strand 7	E	4	10	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	135	136	first strand
Strand 2	E	143	154	anti-parallel
Strand 3	E	139	140	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	135	136	first strand
Strand 2	E	143	154	anti-parallel
Strand 3	E	92	101	anti-parallel
Strand 4	E	182	187	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	112	113	first strand
Strand 2	E	195	196	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	131	first strand
Strand 2	E	174	177	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	258	259	first strand
Strand 2	E	393	394	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	283	285	first strand
Strand 2	E	324	327	parallel
Strand 3	E	368	370	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	540	542	first strand
Strand 2	E	641	646	parallel
Strand 3	E	599	603	parallel
Strand 4	E	565	568	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	258	259	first strand
Strand 2	F	372	373	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	283	286	first strand
Strand 2	F	323	327	parallel
Strand 3	F	367	370	parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	564	568	first strand
Strand 2	F	598	602	parallel
Strand 3	F	640	646	parallel
Strand 4	F	536	542	parallel
Strand 5	F	665	666	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MDN

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MDN