Analysis of interatomic Contacts of Structural Units in PDB entry:
6MDO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MDO entry

There are 7 chains in PDB entry 6MDO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 211ALA 738
B
 GLN 206ALA 738
C
 ILE 208ALA 738
D
 ILE 208ALA 738
E
 PHE 215ALA 738
F
 ASP 498ALA 738
H
 MET 1ARG 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are128 helices in PDB entry 6MDO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
223 234Right-handed alpha
Helix 2
AA2
A
241 249Right-handed alpha
Helix 3
AA3
A
266 277Right-handed alpha
Helix 4
AA4
A
294 317Right-handed alpha
Helix 5
AA5
A
349 359Right-handed alpha
Helix 6
AA6
A
399 418Right-handed alpha
Helix 7
AA7
A
425 432Right-handed alpha
Helix 8
AA8
A
437 455Right-handed alpha
Helix 9
AA9
A
481 486Right-handed alpha
Helix 10
AB1
A
498 503Right-handed alpha
Helix 11
AB2
A
511 531Right-handed alpha
Helix 12
AB3
A
548 559Right-handed alpha
Helix 13
AB4
A
569 574Right-handed alpha
Helix 14
AB5
A
577 594Right-handed alpha
Helix 15
AB6
A
604 609Right-handed alpha
Helix 16
AB7
A
619 631Right-handed alpha
Helix 17
AB8
A
649 655Right-handed alpha
Helix 18
AB9
A
672 684Right-handed alpha
Helix 19
AC1
A
687 698Right-handed alpha
Helix 20
AC2
A
706 719Right-handed alpha
Helix 21
AC3
A
721 734Right-handed alpha
Helix 22
AC4
B
223 240Right-handed alpha
Helix 23
AC5
B
241 249Right-handed alpha
Helix 24
AC6
B
266 277Right-handed alpha
Helix 25
AC7
B
296 316Right-handed alpha
Helix 26
AC8
B
329 334Right-handed alpha
Helix 27
AC9
B
348 359Right-handed alpha
Helix 28
AD1
B
375 379Right-handed 310
Helix 29
AD2
B
380 385Right-handed alpha
Helix 30
AD3
B
399 417Right-handed alpha
Helix 31
AD4
B
425 433Right-handed alpha
Helix 32
AD5
B
437 455Right-handed alpha
Helix 33
AD6
B
481 486Right-handed alpha
Helix 34
AD7
B
498 502Right-handed 310
Helix 35
AD8
B
511 530Right-handed alpha
Helix 36
AD9
B
548 560Right-handed alpha
Helix 37
AE1
B
569 573Right-handed 310
Helix 38
AE2
B
577 593Right-handed alpha
Helix 39
AE3
B
604 609Right-handed alpha
Helix 40
AE4
B
619 630Right-handed alpha
Helix 41
AE5
B
649 655Right-handed alpha
Helix 42
AE6
B
673 684Right-handed alpha
Helix 43
AE7
B
687 698Right-handed alpha
Helix 44
AE8
B
706 719Right-handed alpha
Helix 45
AE9
B
721 735Right-handed alpha
Helix 46
AF1
C
225 236Right-handed alpha
Helix 47
AF2
C
241 249Right-handed alpha
Helix 48
AF3
C
265 277Right-handed alpha
Helix 49
AF4
C
296 307Right-handed alpha
Helix 50
AF5
C
309 317Right-handed alpha
Helix 51
AF6
C
329 334Right-handed alpha
Helix 52
AF7
C
347 359Right-handed alpha
Helix 53
AF8
C
380 385Right-handed alpha
Helix 54
AF9
C
399 417Right-handed alpha
Helix 55
AG1
C
425 433Right-handed alpha
Helix 56
AG2
C
438 457Right-handed alpha
Helix 57
AG3
C
480 486Right-handed alpha
Helix 58
AG4
C
497 503Right-handed alpha
Helix 59
AG5
C
511 531Right-handed alpha
Helix 60
AG6
C
549 561Right-handed alpha
Helix 61
AG7
C
577 593Right-handed alpha
Helix 62
AG8
C
604 609Right-handed alpha
Helix 63
AG9
C
619 631Right-handed alpha
Helix 64
AH1
C
649 655Right-handed alpha
Helix 65
AH2
C
672 684Right-handed alpha
Helix 66
AH3
C
687 699Right-handed alpha
Helix 67
AH4
C
706 719Right-handed alpha
Helix 68
AH5
C
721 738Right-handed alpha
Helix 69
AH6
D
223 235Right-handed alpha
Helix 70
AH7
D
235 240Right-handed alpha
Helix 71
AH8
D
241 248Right-handed alpha
Helix 72
AH9
D
265 276Right-handed alpha
Helix 73
AI1
D
286 291Right-handed 310
Helix 74
AI2
D
296 316Right-handed alpha
Helix 75
AI3
D
329 334Right-handed alpha
Helix 76
AI4
D
345 348Right-handed 310
Helix 77
AI5
D
349 359Right-handed alpha
Helix 78
AI6
D
380 384Right-handed 310
Helix 79
AI7
D
401 417Right-handed alpha
Helix 80
AI8
D
425 433Right-handed alpha
Helix 81
AI9
D
438 458Right-handed alpha
Helix 82
AJ1
D
481 489Right-handed alpha
Helix 83
AJ2
D
511 531Right-handed alpha
Helix 84
AJ3
D
548 561Right-handed alpha
Helix 85
AJ4
D
577 595Right-handed alpha
Helix 86
AJ5
D
604 609Right-handed alpha
Helix 87
AJ6
D
619 631Right-handed alpha
Helix 88
AJ7
D
634 638Right-handed 310
Helix 89
AJ8
D
651 656Right-handed alpha
Helix 90
AJ9
D
656 661Right-handed alpha
Helix 91
AK1
D
672 684Right-handed alpha
Helix 92
AK2
D
687 699Right-handed alpha
Helix 93
AK3
D
706 720Right-handed alpha
Helix 94
AK4
D
721 737Right-handed alpha
Helix 95
AK5
E
223 236Right-handed alpha
Helix 96
AK6
E
265 278Right-handed alpha
Helix 97
AK7
E
286 291Right-handed 310
Helix 98
AK8
E
296 317Right-handed alpha
Helix 99
AK9
E
329 334Right-handed alpha
Helix 100
AL1
E
351 359Right-handed alpha
Helix 101
AL2
E
376 384Right-handed alpha
Helix 102
AL3
E
399 411Right-handed alpha
Helix 103
AL4
E
411 416Right-handed alpha
Helix 104
AL5
E
425 433Right-handed alpha
Helix 105
AL6
E
437 455Right-handed alpha
Helix 106
AL7
E
479 489Right-handed alpha
Helix 107
AL8
E
511 531Right-handed alpha
Helix 108
AL9
E
548 561Right-handed alpha
Helix 109
AM1
E
577 584Right-handed alpha
Helix 110
AM2
E
584 595Right-handed alpha
Helix 111
AM3
E
604 609Right-handed alpha
Helix 112
AM4
E
619 632Right-handed alpha
Helix 113
AM5
E
649 655Right-handed alpha
Helix 114
AM6
E
672 684Right-handed alpha
Helix 115
AM7
E
687 699Right-handed alpha
Helix 116
AM8
E
706 719Right-handed alpha
Helix 117
AM9
E
725 734Right-handed alpha
Helix 118
AN1
F
499 503Right-handed alpha
Helix 119
AN2
F
511 530Right-handed alpha
Helix 120
AN3
F
549 560Right-handed alpha
Helix 121
AN4
F
577 595Right-handed alpha
Helix 122
AN5
F
604 609Right-handed alpha
Helix 123
AN6
F
619 631Right-handed alpha
Helix 124
AN7
F
649 655Right-handed alpha
Helix 125
AN8
F
672 684Right-handed alpha
Helix 126
AN9
F
687 696Right-handed alpha
Helix 127
AO1
F
706 720Right-handed alpha
Helix 128
AO2
F
724 736Right-handed alpha
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There are 14 sheets in PDB entry 6MDO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 285first strand
Strand 2
A
323 327parallel
Strand 3
A
367 373parallel
Strand 4
A
255 259parallel
Strand 5
A
391 394parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
564 568first strand
Strand 2
A
597 602parallel
Strand 3
A
639 644parallel
Strand 4
A
536 542parallel
Strand 5
A
663 666parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
280 285first strand
Strand 2
B
323 327parallel
Strand 3
B
369 373parallel
Strand 4
B
255 259parallel
Strand 5
B
391 394parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
564 568first strand
Strand 2
B
597 602parallel
Strand 3
B
639 646parallel
Strand 4
B
538 542parallel
Strand 5
B
663 666parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
670 672first strand
Strand 2
B
702 705anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
283 284first strand
Strand 2
C
323 326parallel
Strand 3
C
367 373parallel
Strand 4
C
257 259parallel
Strand 5
C
392 394parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
597 601first strand
Strand 2
C
639 646parallel
Strand 3
C
536 542parallel
Strand 4
C
663 666parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
255 259first strand
Strand 2
D
367 373parallel
Strand 3
D
323 326parallel
Strand 4
D
283 284parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
565 568first strand
Strand 2
D
597 602parallel
Strand 3
D
639 646parallel
Strand 4
D
536 542parallel
Strand 5
D
663 666parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
611 612first strand
Strand 2
D
617 618anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
372 373first strand
Strand 2
E
258 259parallel
Strand 3
E
393 394parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
283 285first strand
Strand 2
E
324 327parallel
Strand 3
E
368 370parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
565 568first strand
Strand 2
E
599 602parallel
Strand 3
E
641 646parallel
Strand 4
E
539 542parallel
Strand 5
E
663 666parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
564 568first strand
Strand 2
F
598 602parallel
Strand 3
F
640 646parallel
Strand 4
F
536 542parallel
Strand 5
F
665 666parallel
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