Analysis of interatomic Contacts of Structural Units in PDB entry:
6MDP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MDP entry

There are 7 chains in PDB entry 6MDP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 211	ALA 738
B	SER 207	ALA 738
C	ILE 208	ALA 738
D	ILE 209	ALA 738
E	GLU 216	ALA 738
F	GLN 496	ALA 738
H	MET 1	ARG 17

There are125 helices in PDB entry 6MDP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	225	234	Right-handed alpha
Helix 2	AA2	A	234	239	Right-handed alpha
Helix 3	AA3	A	241	249	Right-handed alpha
Helix 4	AA4	A	265	278	Right-handed alpha
Helix 5	AA5	A	288	290	Right-handed 310
Helix 6	AA6	A	296	301	Right-handed alpha
Helix 7	AA7	A	302	316	Right-handed alpha
Helix 8	AA8	A	348	359	Right-handed alpha
Helix 9	AA9	A	380	385	Right-handed alpha
Helix 10	AB1	A	399	418	Right-handed alpha
Helix 11	AB2	A	425	433	Right-handed alpha
Helix 12	AB3	A	437	455	Right-handed alpha
Helix 13	AB4	A	479	485	Right-handed alpha
Helix 14	AB5	A	496	503	Right-handed alpha
Helix 15	AB6	A	511	530	Right-handed alpha
Helix 16	AB7	A	548	559	Right-handed alpha
Helix 17	AB8	A	577	593	Right-handed alpha
Helix 18	AB9	A	604	609	Right-handed alpha
Helix 19	AC1	A	619	632	Right-handed alpha
Helix 20	AC2	A	649	655	Right-handed alpha
Helix 21	AC3	A	672	683	Right-handed alpha
Helix 22	AC4	A	687	700	Right-handed alpha
Helix 23	AC5	A	706	719	Right-handed alpha
Helix 24	AC6	A	721	723	Right-handed 310
Helix 25	AC7	A	724	735	Right-handed alpha
Helix 26	AC8	B	224	235	Right-handed alpha
Helix 27	AC9	B	244	249	Right-handed alpha
Helix 28	AD1	B	265	276	Right-handed alpha
Helix 29	AD2	B	288	291	Right-handed 310
Helix 30	AD3	B	296	317	Right-handed alpha
Helix 31	AD4	B	347	359	Right-handed alpha
Helix 32	AD5	B	380	385	Right-handed alpha
Helix 33	AD6	B	399	416	Right-handed alpha
Helix 34	AD7	B	425	433	Right-handed alpha
Helix 35	AD8	B	439	457	Right-handed alpha
Helix 36	AD9	B	480	489	Right-handed alpha
Helix 37	AE1	B	511	530	Right-handed alpha
Helix 38	AE2	B	548	561	Right-handed alpha
Helix 39	AE3	B	577	595	Right-handed alpha
Helix 40	AE4	B	604	609	Right-handed alpha
Helix 41	AE5	B	619	631	Right-handed alpha
Helix 42	AE6	B	649	656	Right-handed alpha
Helix 43	AE7	B	656	661	Right-handed alpha
Helix 44	AE8	B	673	684	Right-handed alpha
Helix 45	AE9	B	687	699	Right-handed alpha
Helix 46	AF1	B	706	719	Right-handed alpha
Helix 47	AF2	B	724	734	Right-handed alpha
Helix 48	AF3	C	223	235	Right-handed alpha
Helix 49	AF4	C	241	248	Right-handed alpha
Helix 50	AF5	C	265	273	Right-handed alpha
Helix 51	AF6	C	287	291	Right-handed 310
Helix 52	AF7	C	296	307	Right-handed alpha
Helix 53	AF8	C	309	316	Right-handed alpha
Helix 54	AF9	C	346	360	Right-handed alpha
Helix 55	AG1	C	380	385	Right-handed alpha
Helix 56	AG2	C	401	417	Right-handed alpha
Helix 57	AG3	C	425	431	Right-handed alpha
Helix 58	AG4	C	438	458	Right-handed alpha
Helix 59	AG5	C	480	486	Right-handed alpha
Helix 60	AG6	C	511	530	Right-handed alpha
Helix 61	AG7	C	548	560	Right-handed alpha
Helix 62	AG8	C	577	593	Right-handed alpha
Helix 63	AG9	C	604	609	Right-handed alpha
Helix 64	AH1	C	619	631	Right-handed alpha
Helix 65	AH2	C	649	655	Right-handed alpha
Helix 66	AH3	C	673	684	Right-handed alpha
Helix 67	AH4	C	687	700	Right-handed alpha
Helix 68	AH5	C	706	719	Right-handed alpha
Helix 69	AH6	C	721	737	Right-handed alpha
Helix 70	AH7	D	224	235	Right-handed alpha
Helix 71	AH8	D	241	249	Right-handed alpha
Helix 72	AH9	D	265	277	Right-handed alpha
Helix 73	AI1	D	296	315	Right-handed alpha
Helix 74	AI2	D	329	334	Right-handed alpha
Helix 75	AI3	D	350	360	Right-handed alpha
Helix 76	AI4	D	375	379	Right-handed 310
Helix 77	AI5	D	399	417	Right-handed alpha
Helix 78	AI6	D	425	433	Right-handed alpha
Helix 79	AI7	D	438	458	Right-handed alpha
Helix 80	AI8	D	479	487	Right-handed alpha
Helix 81	AI9	D	510	531	Right-handed alpha
Helix 82	AJ1	D	548	561	Right-handed alpha
Helix 83	AJ2	D	577	595	Right-handed alpha
Helix 84	AJ3	D	604	609	Right-handed alpha
Helix 85	AJ4	D	619	632	Right-handed alpha
Helix 86	AJ5	D	649	655	Right-handed alpha
Helix 87	AJ6	D	672	682	Right-handed alpha
Helix 88	AJ7	D	687	702	Right-handed alpha
Helix 89	AJ8	D	706	719	Right-handed alpha
Helix 90	AJ9	D	725	734	Right-handed alpha
Helix 91	AK1	E	223	230	Right-handed alpha
Helix 92	AK2	E	265	277	Right-handed alpha
Helix 93	AK3	E	287	291	Right-handed 310
Helix 94	AK4	E	296	307	Right-handed alpha
Helix 95	AK5	E	314	318	Right-handed 310
Helix 96	AK6	E	330	333	Right-handed 310
Helix 97	AK7	E	351	360	Right-handed alpha
Helix 98	AK8	E	375	384	Right-handed alpha
Helix 99	AK9	E	401	417	Right-handed alpha
Helix 100	AL1	E	425	431	Right-handed alpha
Helix 101	AL2	E	439	441	Right-handed 310
Helix 102	AL3	E	442	454	Right-handed alpha
Helix 103	AL4	E	481	489	Right-handed alpha
Helix 104	AL5	E	511	530	Right-handed alpha
Helix 105	AL6	E	549	560	Right-handed alpha
Helix 106	AL7	E	577	595	Right-handed alpha
Helix 107	AL8	E	604	609	Right-handed alpha
Helix 108	AL9	E	619	632	Right-handed alpha
Helix 109	AM1	E	649	655	Right-handed alpha
Helix 110	AM2	E	656	661	Right-handed alpha
Helix 111	AM3	E	672	684	Right-handed alpha
Helix 112	AM4	E	687	696	Right-handed alpha
Helix 113	AM5	E	706	720	Right-handed alpha
Helix 114	AM6	E	721	736	Right-handed alpha
Helix 115	AM7	F	511	530	Right-handed alpha
Helix 116	AM8	F	548	561	Right-handed alpha
Helix 117	AM9	F	577	595	Right-handed alpha
Helix 118	AN1	F	604	610	Right-handed alpha
Helix 119	AN2	F	619	632	Right-handed alpha
Helix 120	AN3	F	649	655	Right-handed alpha
Helix 121	AN4	F	672	684	Right-handed alpha
Helix 122	AN5	F	687	700	Right-handed alpha
Helix 123	AN6	F	706	718	Right-handed alpha
Helix 124	AN7	F	720	725	Right-handed alpha
Helix 125	AN8	F	725	738	Right-handed alpha

There are 14 sheets in PDB entry 6MDP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	286	first strand
Strand 2	A	323	329	parallel
Strand 3	A	369	373	parallel
Strand 4	A	255	259	parallel
Strand 5	A	391	394	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	540	first strand
Strand 2	A	639	645	parallel
Strand 3	A	597	603	parallel
Strand 4	A	564	568	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	285	286	first strand
Strand 2	B	324	328	parallel
Strand 3	B	368	373	parallel
Strand 4	B	255	259	parallel
Strand 5	B	391	393	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	566	567	first strand
Strand 2	B	600	602	parallel
Strand 3	B	643	646	parallel
Strand 4	B	539	542	parallel
Strand 5	B	663	666	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	670	672	first strand
Strand 2	B	702	705	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	259	first strand
Strand 2	C	367	373	parallel
Strand 3	C	323	326	parallel
Strand 4	C	283	284	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	565	568	first strand
Strand 2	C	597	602	parallel
Strand 3	C	639	644	parallel
Strand 4	C	536	540	parallel
Strand 5	C	663	664	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	670	672	first strand
Strand 2	C	702	705	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	258	first strand
Strand 2	D	391	393	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	324	325	first strand
Strand 2	D	368	369	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	564	568	first strand
Strand 2	D	598	602	parallel
Strand 3	D	641	646	parallel
Strand 4	D	538	542	parallel
Strand 5	D	663	666	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	257	259	first strand
Strand 2	E	368	373	parallel
Strand 3	E	324	328	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	564	568	first strand
Strand 2	E	597	602	parallel
Strand 3	E	639	646	parallel
Strand 4	E	536	542	parallel
Strand 5	E	665	666	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	537	540	first strand
Strand 2	F	639	645	parallel
Strand 3	F	597	603	parallel
Strand 4	F	564	568	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MDP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MDP