Analysis of interatomic Contacts of Structural Units in PDB entry:
6MDT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MDT entry

There are 6 chains in PDB entry 6MDT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
ALA 512ASP 664
G
ALA 32GLN 507
D
GLU 1VAL 222
E
SER 2GLU 214
H
GLN 1PRO 211
L
SER 6THR 210
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6MDT. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
B
529 534Right-handed alpha
Helix 2
AA2
B
538 543Right-handed alpha
Helix 3
AA3
B
544 549Right-handed 310
Helix 4
AA4
B
569 595Right-handed alpha
Helix 5
AA5
B
618 626Right-handed alpha
Helix 6
AA6
B
627 636Right-handed alpha
Helix 7
AA7
B
638 650Right-handed alpha
Helix 8
AA8
B
651 662Right-handed alpha
Helix 9
AA9
G
98 117Right-handed alpha
Helix 10
AB1
G
123 127Right-handed 310
Helix 11
AB2
G
177 179Right-handed 310
Helix 12
AB3
G
335 352Right-handed alpha
Helix 13
AB4
G
368 373Right-handed alpha
Helix 14
AB5
G
425 429Right-handed 310
Helix 15
AB6
G
476 481Right-handed alpha
Helix 16
AB7
D
83 87Right-handed 310
Helix 17
AB8
D
156 158Right-handed 310
Helix 18
AB9
D
201 204Right-handed 310
Helix 19
AC1
D
217 222Right-handed alpha
Helix 20
AC2
E
25 29Right-handed 310
Helix 21
AC3
E
81 85Right-handed 310
Helix 22
AC4
E
125 131Right-handed alpha
Helix 23
AC5
E
185 191Right-handed alpha
Helix 24
AC6
H
129 131Right-handed 310
Helix 25
AC7
L
79 83Right-handed 310
Helix 26
AC8
L
122 128Right-handed alpha
Helix 27
AC9
L
182 189Right-handed alpha
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There are 33 sheets in PDB entry 6MDT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
603 609first strand
Strand 2
G
35 40anti-parallel
Strand 3
G
494 499anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
45 46first strand
Strand 2
G
486 491anti-parallel
Strand 3
G
223 227anti-parallel
Strand 4
G
242 245anti-parallel
Strand 5
G
83 86anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
53 55first strand
Strand 2
G
216 218anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
91 94first strand
Strand 2
G
236 239anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
169 174first strand
Strand 2
G
156 162anti-parallel
Strand 3
G
129 132anti-parallel
Strand 4
G
190 193anti-parallel
Strand 5
G
181 185anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
201 203first strand
Strand 2
G
433 435parallel
Strand 3
G
423 424anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
260 261first strand
Strand 2
G
441 454anti-parallel
Strand 3
G
284 302anti-parallel
Strand 4
G
271 274anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
260 261first strand
Strand 2
G
441 454anti-parallel
Strand 3
G
284 302anti-parallel
Strand 4
G
330 334anti-parallel
Strand 5
G
413 421anti-parallel
Strand 6
G
381 385anti-parallel
Strand 7
G
374 378anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
304 312first strand
Strand 2
G
315 320anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
3 6first strand
Strand 2
D
17 27anti-parallel
Strand 3
D
74 82anti-parallel
Strand 4
D
67 71anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
3 6first strand
Strand 2
D
17 27anti-parallel
Strand 3
D
74 82anti-parallel
Strand 4
D
72 72anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
10 12first strand
Strand 2
D
107 111parallel
Strand 3
D
88 94anti-parallel
Strand 4
D
34 40anti-parallel
Strand 5
D
44 51anti-parallel
Strand 6
D
57 59anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
10 12first strand
Strand 2
D
107 111parallel
Strand 3
D
88 94anti-parallel
Strand 4
D
102 103anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
122 130first strand
Strand 2
D
135 145anti-parallel
Strand 3
D
176 185anti-parallel
Strand 4
D
163 165anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
122 130first strand
Strand 2
D
135 145anti-parallel
Strand 3
D
176 185anti-parallel
Strand 4
D
169 170anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
151 154first strand
Strand 2
D
195 200anti-parallel
Strand 3
D
205 210anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
5 6first strand
Strand 2
E
17 23anti-parallel
Strand 3
E
72 78anti-parallel
Strand 4
E
64 68anti-parallel
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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
9 13first strand
Strand 2
E
105 110parallel
Strand 3
E
87 93anti-parallel
Strand 4
E
34 39anti-parallel
Strand 5
E
47 50anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
9 13first strand
Strand 2
E
105 110parallel
Strand 3
E
87 93anti-parallel
Strand 4
E
100 101anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
118 122first strand
Strand 2
E
134 141anti-parallel
Strand 3
E
176 184anti-parallel
Strand 4
E
163 165anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
118 122first strand
Strand 2
E
134 141anti-parallel
Strand 3
E
176 184anti-parallel
Strand 4
E
169 170anti-parallel
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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
149 154first strand
Strand 2
E
195 200anti-parallel
Strand 3
E
205 210anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
4 7first strand
Strand 2
H
18 24anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 71anti-parallel
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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
11 12first strand
Strand 2
H
105 109parallel
Strand 3
H
88 100anti-parallel
Strand 4
H
33 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
57 59anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
11 12first strand
Strand 2
H
105 109parallel
Strand 3
H
88 100anti-parallel
Strand 4
H
100 101anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
119 122first strand
Strand 2
H
133 143anti-parallel
Strand 3
H
174 183anti-parallel
Strand 4
H
161 163anti-parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
119 122first strand
Strand 2
H
133 143anti-parallel
Strand 3
H
174 183anti-parallel
Strand 4
H
167 168anti-parallel
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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
149 152first strand
Strand 2
H
193 198anti-parallel
Strand 3
H
203 208anti-parallel
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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
9 14first strand
Strand 2
L
102 107parallel
Strand 3
L
85 89anti-parallel
Strand 4
L
34 38anti-parallel
Strand 5
L
45 48anti-parallel
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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
19 21first strand
Strand 2
L
73 75anti-parallel
Strand 3
L
62 64anti-parallel
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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
115 119first strand
Strand 2
L
131 140anti-parallel
Strand 3
L
173 181anti-parallel
Strand 4
L
160 162anti-parallel
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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
115 119first strand
Strand 2
L
131 140anti-parallel
Strand 3
L
173 181anti-parallel
Strand 4
L
166 167anti-parallel
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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
154 155first strand
Strand 2
L
145 151anti-parallel
Strand 3
L
192 198anti-parallel
Strand 4
L
201 207anti-parallel
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