Analysis of interatomic Contacts of Structural Units in PDB entry:
6MDV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MDV entry

There are 2 chains in PDB entry 6MDV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 46	ARG 832
B	THR 46	ARG 832

There are 73 helices in PDB entry 6MDV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	61	Right-handed alpha
Helix 2	AA2	A	74	76	Right-handed 310
Helix 3	AA3	A	92	96	Right-handed 310
Helix 4	AA4	A	115	123	Right-handed alpha
Helix 5	AA5	A	123	131	Right-handed alpha
Helix 6	AA6	A	142	144	Right-handed 310
Helix 7	AA7	A	148	154	Right-handed 310
Helix 8	AA8	A	157	173	Right-handed alpha
Helix 9	AA9	A	194	212	Right-handed alpha
Helix 10	AB1	A	230	233	Right-handed 310
Helix 11	AB2	A	234	241	Right-handed alpha
Helix 12	AB3	A	242	244	Right-handed 310
Helix 13	AB4	A	261	272	Right-handed alpha
Helix 14	AB5	A	276	278	Right-handed 310
Helix 15	AB6	A	309	313	Right-handed 310
Helix 16	AB7	A	317	325	Right-handed alpha
Helix 17	AB8	A	341	344	Right-handed 310
Helix 18	AB9	A	350	354	Right-handed 310
Helix 19	AC1	A	364	368	Right-handed 310
Helix 20	AC2	A	374	386	Right-handed alpha
Helix 21	AC3	A	387	391	Right-handed 310
Helix 22	AC4	A	400	412	Right-handed alpha
Helix 23	AC5	A	414	418	Right-handed 310
Helix 24	AC6	A	437	441	Right-handed 310
Helix 25	AC7	A	459	463	Right-handed 310
Helix 26	AC8	A	464	470	Right-handed 310
Helix 27	AC9	A	521	536	Right-handed alpha
Helix 28	AD1	A	576	581	Right-handed alpha
Helix 29	AD2	A	594	603	Right-handed alpha
Helix 30	AD3	A	617	622	Right-handed alpha
Helix 31	AD4	A	693	698	Right-handed alpha
Helix 32	AD5	A	699	702	Right-handed 310
Helix 33	AD6	A	737	739	Right-handed 310
Helix 34	AD7	A	745	748	Right-handed 310
Helix 35	AD8	A	769	779	Right-handed alpha
Helix 36	AD9	A	780	783	Right-handed 310
Helix 37	AE1	B	47	60	Right-handed alpha
Helix 38	AE2	B	74	76	Right-handed 310
Helix 39	AE3	B	92	96	Right-handed 310
Helix 40	AE4	B	115	123	Right-handed alpha
Helix 41	AE5	B	123	131	Right-handed alpha
Helix 42	AE6	B	142	145	Right-handed 310
Helix 43	AE7	B	148	154	Right-handed 310
Helix 44	AE8	B	157	173	Right-handed alpha
Helix 45	AE9	B	194	212	Right-handed alpha
Helix 46	AF1	B	230	233	Right-handed 310
Helix 47	AF2	B	234	241	Right-handed alpha
Helix 48	AF3	B	242	244	Right-handed 310
Helix 49	AF4	B	261	272	Right-handed alpha
Helix 50	AF5	B	276	278	Right-handed 310
Helix 51	AF6	B	309	313	Right-handed 310
Helix 52	AF7	B	317	325	Right-handed alpha
Helix 53	AF8	B	341	344	Right-handed 310
Helix 54	AF9	B	350	354	Right-handed 310
Helix 55	AG1	B	364	368	Right-handed 310
Helix 56	AG2	B	374	386	Right-handed alpha
Helix 57	AG3	B	387	391	Right-handed 310
Helix 58	AG4	B	400	412	Right-handed alpha
Helix 59	AG5	B	414	418	Right-handed 310
Helix 60	AG6	B	437	441	Right-handed 310
Helix 61	AG7	B	459	463	Right-handed 310
Helix 62	AG8	B	464	470	Right-handed 310
Helix 63	AG9	B	498	502	Right-handed 310
Helix 64	AH1	B	521	536	Right-handed alpha
Helix 65	AH2	B	576	581	Right-handed alpha
Helix 66	AH3	B	594	603	Right-handed alpha
Helix 67	AH4	B	617	622	Right-handed alpha
Helix 68	AH5	B	693	698	Right-handed alpha
Helix 69	AH6	B	699	702	Right-handed 310
Helix 70	AH7	B	737	739	Right-handed 310
Helix 71	AH8	B	745	748	Right-handed 310
Helix 72	AH9	B	769	779	Right-handed alpha
Helix 73	AI1	B	780	783	Right-handed 310

There are 18 sheets in PDB entry 6MDV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	72	first strand
Strand 2	A	102	106	parallel
Strand 3	A	134	140	parallel
Strand 4	A	180	185	parallel
Strand 5	A	222	227	parallel
Strand 6	A	246	250	parallel
Strand 7	A	280	285	parallel
Strand 8	A	335	339	parallel
Strand 9	A	66	72	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	428	first strand
Strand 2	A	446	450	parallel
Strand 3	A	472	476	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	458	first strand
Strand 2	A	483	485	parallel
Strand 3	A	507	509	parallel
Strand 4	A	545	546	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	564	567	first strand
Strand 2	A	663	671	parallel
Strand 3	A	651	658	anti-parallel
Strand 4	A	629	634	anti-parallel
Strand 5	A	639	641	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	573	575	first strand
Strand 2	A	644	646	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	584	585	first strand
Strand 2	A	591	592	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	605	606	first strand
Strand 2	A	609	610	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	679	680	first strand
Strand 2	A	823	831	anti-parallel
Strand 3	A	727	735	anti-parallel
Strand 4	A	795	803	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	686	690	first strand
Strand 2	A	716	721	anti-parallel
Strand 3	A	807	815	anti-parallel
Strand 4	A	750	757	anti-parallel
Strand 5	A	784	789	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	72	first strand
Strand 2	B	102	106	parallel
Strand 3	B	134	140	parallel
Strand 4	B	180	185	parallel
Strand 5	B	222	227	parallel
Strand 6	B	246	250	parallel
Strand 7	B	280	285	parallel
Strand 8	B	335	339	parallel
Strand 9	B	66	72	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	424	428	first strand
Strand 2	B	446	450	parallel
Strand 3	B	472	476	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	458	first strand
Strand 2	B	483	485	parallel
Strand 3	B	507	509	parallel
Strand 4	B	545	546	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	567	first strand
Strand 2	B	663	671	parallel
Strand 3	B	651	658	anti-parallel
Strand 4	B	629	633	anti-parallel
Strand 5	B	639	641	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	573	575	first strand
Strand 2	B	644	646	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	584	585	first strand
Strand 2	B	591	592	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	605	606	first strand
Strand 2	B	609	610	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	679	680	first strand
Strand 2	B	823	831	anti-parallel
Strand 3	B	727	735	anti-parallel
Strand 4	B	795	803	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	686	690	first strand
Strand 2	B	716	721	anti-parallel
Strand 3	B	807	815	anti-parallel
Strand 4	B	750	757	anti-parallel
Strand 5	B	784	789	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MDV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MDV