Analysis of interatomic Contacts of Structural Units in PDB entry:
6MDY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MDY entry

There are 4 chains in PDB entry 6MDY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 0	PHE 274
B	HIS 0	PHE 274
C	HIS 0	PHE 274
D	HIS -1	PHE 274

There are 44 helices in PDB entry 6MDY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	43	Right-handed alpha
Helix 2	AA2	A	68	83	Right-handed alpha
Helix 3	AA3	A	96	102	Right-handed alpha
Helix 4	AA4	A	110	114	Right-handed 310
Helix 5	AA5	A	116	125	Right-handed alpha
Helix 6	AA6	A	141	152	Right-handed alpha
Helix 7	AA7	A	176	182	Right-handed alpha
Helix 8	AA8	A	183	186	Right-handed 310
Helix 9	AA9	A	212	225	Right-handed alpha
Helix 10	AB1	A	252	271	Right-handed alpha
Helix 11	AB2	B	25	44	Right-handed alpha
Helix 12	AB3	B	68	83	Right-handed alpha
Helix 13	AB4	B	96	102	Right-handed alpha
Helix 14	AB5	B	110	114	Right-handed 310
Helix 15	AB6	B	116	125	Right-handed alpha
Helix 16	AB7	B	139	141	Right-handed 310
Helix 17	AB8	B	142	152	Right-handed alpha
Helix 18	AB9	B	176	182	Right-handed alpha
Helix 19	AC1	B	183	186	Right-handed 310
Helix 20	AC2	B	210	212	Right-handed 310
Helix 21	AC3	B	213	225	Right-handed alpha
Helix 22	AC4	B	252	271	Right-handed alpha
Helix 23	AC5	C	25	44	Right-handed alpha
Helix 24	AC6	C	70	83	Right-handed alpha
Helix 25	AC7	C	96	102	Right-handed alpha
Helix 26	AC8	C	110	114	Right-handed 310
Helix 27	AC9	C	116	125	Right-handed alpha
Helix 28	AD1	C	139	141	Right-handed 310
Helix 29	AD2	C	142	152	Right-handed alpha
Helix 30	AD3	C	176	182	Right-handed alpha
Helix 31	AD4	C	183	186	Right-handed 310
Helix 32	AD5	C	212	225	Right-handed alpha
Helix 33	AD6	C	252	271	Right-handed alpha
Helix 34	AD7	D	25	43	Right-handed alpha
Helix 35	AD8	D	60	64	Right-handed 310
Helix 36	AD9	D	68	83	Right-handed alpha
Helix 37	AE1	D	96	102	Right-handed alpha
Helix 38	AE2	D	110	114	Right-handed 310
Helix 39	AE3	D	116	125	Right-handed alpha
Helix 40	AE4	D	139	152	Right-handed alpha
Helix 41	AE5	D	176	182	Right-handed alpha
Helix 42	AE6	D	183	186	Right-handed 310
Helix 43	AE7	D	212	225	Right-handed alpha
Helix 44	AE8	D	252	271	Right-handed alpha

There are 12 sheets in PDB entry 6MDY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1	3	first strand
Strand 2	A	6	8	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	249	first strand
Strand 2	A	228	234	parallel
Strand 3	A	189	192	parallel
Strand 4	A	158	162	parallel
Strand 5	A	130	133	parallel
Strand 6	A	106	109	parallel
Strand 7	A	87	90	parallel
Strand 8	A	47	50	parallel
Strand 9	A	15	19	parallel
Strand 10	A	228	234	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	166	first strand
Strand 2	A	172	173	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1	3	first strand
Strand 2	B	6	8	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	249	first strand
Strand 2	B	228	234	parallel
Strand 3	B	189	192	parallel
Strand 4	B	158	162	parallel
Strand 5	B	130	133	parallel
Strand 6	B	106	109	parallel
Strand 7	B	87	90	parallel
Strand 8	B	47	50	parallel
Strand 9	B	15	19	parallel
Strand 10	B	228	234	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	166	first strand
Strand 2	B	172	173	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1	3	first strand
Strand 2	C	6	8	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	249	first strand
Strand 2	C	228	234	parallel
Strand 3	C	189	192	parallel
Strand 4	C	158	162	parallel
Strand 5	C	130	133	parallel
Strand 6	C	106	109	parallel
Strand 7	C	87	90	parallel
Strand 8	C	47	50	parallel
Strand 9	C	15	19	parallel
Strand 10	C	228	234	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	166	first strand
Strand 2	C	172	173	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1	3	first strand
Strand 2	D	6	8	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	249	first strand
Strand 2	D	228	234	parallel
Strand 3	D	189	192	parallel
Strand 4	D	158	162	parallel
Strand 5	D	130	133	parallel
Strand 6	D	106	109	parallel
Strand 7	D	87	90	parallel
Strand 8	D	47	50	parallel
Strand 9	D	15	19	parallel
Strand 10	D	228	234	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	166	first strand
Strand 2	D	172	173	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MDY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MDY