Analysis of interatomic Contacts of Structural Units in PDB entry:
6ME5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ME5 entry

There are 2 chains in PDB entry 6ME5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 23ASP 1003
A
 SER 1005PHE 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6ME5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 55Right-handed alpha
Helix 2
AA2
A
60 62Right-handed 310
Helix 3
AA3
A
63 79Right-handed alpha
Helix 4
AA4
A
79 91Right-handed alpha
Helix 5
AA5
A
97 135Right-handed alpha
Helix 6
AA6
A
143 160Right-handed alpha
Helix 7
AA7
A
160 165Right-handed alpha
Helix 8
AA8
A
184 196Right-handed alpha
Helix 9
AA9
A
196 1002Right-handed alpha
Helix 10
AB1
A
1008 1012Right-handed 310
Helix 11
AB2
A
1015 1027Right-handed alpha
Helix 12
AB3
A
1047 1060Right-handed alpha
Helix 13
AB4
A
1061 1065Right-handed 310
Helix 14
AB5
A
1076 1090Right-handed alpha
Helix 15
AB6
A
1101 1112Right-handed alpha
Helix 16
AB7
A
1125 1133Right-handed alpha
Helix 17
AB8
A
1145 1150Right-handed alpha
Helix 18
AB9
A
1162 1175Right-handed alpha
Helix 19
AC1
A
1177 229Right-handed alpha
Helix 20
AC2
A
234 264Right-handed alpha
Helix 21
AC3
A
264 272Right-handed alpha
Helix 22
AC4
A
273 299Right-handed alpha
Helix 23
AC5
A
299 315Right-handed alpha
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There are 2 sheets in PDB entry 6ME5. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 171first strand
Strand 2
A
176 179anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1093 1096first strand
Strand 2
A
1067 1072parallel
Strand 3
A
1033 1038parallel
Strand 4
A
1114 1117parallel
Strand 5
A
1137 1141parallel
Strand 6
A
1156 1158parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il