Analysis of interatomic Contacts of Structural Units in PDB entry:
6ME9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6ME9 entry

There are 2 chains in PDB entry 6ME9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2001ASN 328
B
 ALA 2001ASN 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6ME9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2002 2019Right-handed alpha
Helix 2
AA2
A
2022 2042Right-handed alpha
Helix 3
AA3
A
2055 2082Right-handed alpha
Helix 4
AA4
A
2084 2097Right-handed alpha
Helix 5
AA5
A
38 68Right-handed alpha
Helix 6
AA6
A
68 73Right-handed alpha
Helix 7
AA7
A
77 92Right-handed alpha
Helix 8
AA8
A
92 103Right-handed alpha
Helix 9
AA9
A
109 143Right-handed alpha
Helix 10
AB1
A
144 151Right-handed alpha
Helix 11
AB2
A
155 173Right-handed alpha
Helix 12
AB3
A
173 179Right-handed alpha
Helix 13
AB4
A
197 208Right-handed alpha
Helix 14
AB5
A
209 229Right-handed alpha
Helix 15
AB6
A
1018 1022Right-handed 310
Helix 16
AB7
A
1044 1046Right-handed 310
Helix 17
AB8
A
245 277Right-handed alpha
Helix 18
AB9
A
280 285Right-handed alpha
Helix 19
AC1
A
286 312Right-handed alpha
Helix 20
AC2
A
312 328Right-handed alpha
Helix 21
AC3
B
2002 2019Right-handed alpha
Helix 22
AC4
B
2023 2042Right-handed alpha
Helix 23
AC5
B
2055 2082Right-handed alpha
Helix 24
AC6
B
2084 2093Right-handed alpha
Helix 25
AC7
B
2093 2099Right-handed alpha
Helix 26
AC8
B
2103 35Right-handed alpha
Helix 27
AC9
B
38 67Right-handed alpha
Helix 28
AD1
B
68 72Right-handed 310
Helix 29
AD2
B
73 92Right-handed alpha
Helix 30
AD3
B
92 103Right-handed alpha
Helix 31
AD4
B
109 143Right-handed alpha
Helix 32
AD5
B
145 150Right-handed alpha
Helix 33
AD6
B
155 173Right-handed alpha
Helix 34
AD7
B
173 179Right-handed alpha
Helix 35
AD8
B
197 207Right-handed alpha
Helix 36
AD9
B
209 229Right-handed alpha
Helix 37
AE1
B
247 277Right-handed alpha
Helix 38
AE2
B
280 285Right-handed alpha
Helix 39
AE3
B
286 312Right-handed alpha
Helix 40
AE4
B
312 328Right-handed alpha
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There are 3 sheets in PDB entry 6ME9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 184first strand
Strand 2
A
189 192anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1011 1012first strand
Strand 2
A
1003 1005anti-parallel
Strand 3
A
1048 1050anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 184first strand
Strand 2
B
189 192anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il