Analysis of interatomic Contacts of Structural Units in PDB entry:
6MEA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MEA entry

There are 2 chains in PDB entry 6MEA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 308THR 469
B
 LYS 309THR 469
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 6MEA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
325 333Right-handed alpha
Helix 2
AA2
A
351 360Right-handed alpha
Helix 3
AA3
A
362 376Right-handed alpha
Helix 4
AA4
A
402 406Right-handed 310
Helix 5
AA5
A
408 410Right-handed 310
Helix 6
AA6
A
411 418Right-handed alpha
Helix 7
AA7
A
438 450Right-handed alpha
Helix 8
AA8
A
460 469Right-handed alpha
Helix 9
AA9
B
325 333Right-handed alpha
Helix 10
AB1
B
351 360Right-handed alpha
Helix 11
AB2
B
362 376Right-handed alpha
Helix 12
AB3
B
402 406Right-handed 310
Helix 13
AB4
B
408 410Right-handed 310
Helix 14
AB5
B
411 418Right-handed alpha
Helix 15
AB6
B
438 450Right-handed alpha
Helix 16
AB7
B
460 469Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6MEA. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 314first strand
Strand 2
A
319 323anti-parallel
Strand 3
A
453 458parallel
Strand 4
A
424 427parallel
Strand 5
A
337 342parallel
Strand 6
A
394 399parallel
Strand 7
A
383 387anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
312 314first strand
Strand 2
B
319 323anti-parallel
Strand 3
B
453 458parallel
Strand 4
B
424 427parallel
Strand 5
B
337 342parallel
Strand 6
B
394 399parallel
Strand 7
B
383 387anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il