Analysis of interatomic Contacts of Structural Units in PDB entry:
6MEP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MEP entry

There are 2 chains in PDB entry 6MEP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 576ASP 863
B
 GLU 578PRO 862
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6MEP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
576 581Right-handed 310
Helix 2
AA2
A
583 585Right-handed 310
Helix 3
AA3
A
634 643Right-handed alpha
Helix 4
AA4
A
678 687Right-handed alpha
Helix 5
AA5
A
696 716Right-handed alpha
Helix 6
AA6
A
725 727Right-handed 310
Helix 7
AA7
A
763 767Right-handed 310
Helix 8
AA8
A
768 774Right-handed alpha
Helix 9
AA9
A
778 796Right-handed alpha
Helix 10
AB1
A
805 807Right-handed 310
Helix 11
AB2
A
808 815Right-handed alpha
Helix 12
AB3
A
826 836Right-handed alpha
Helix 13
AB4
A
840 844Right-handed 310
Helix 14
AB5
A
846 860Right-handed alpha
Helix 15
AB6
B
583 585Right-handed 310
Helix 16
AB7
B
638 643Right-handed alpha
Helix 17
AB8
B
678 687Right-handed alpha
Helix 18
AB9
B
696 717Right-handed alpha
Helix 19
AC1
B
725 727Right-handed 310
Helix 20
AC2
B
763 767Right-handed 310
Helix 21
AC3
B
768 774Right-handed alpha
Helix 22
AC4
B
778 796Right-handed alpha
Helix 23
AC5
B
805 807Right-handed 310
Helix 24
AC6
B
808 815Right-handed alpha
Helix 25
AC7
B
826 836Right-handed alpha
Helix 26
AC8
B
840 844Right-handed 310
Helix 27
AC9
B
846 860Right-handed alpha
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There are 4 sheets in PDB entry 6MEP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
587 596first strand
Strand 2
A
599 607anti-parallel
Strand 3
A
613 619anti-parallel
Strand 4
A
668 672anti-parallel
Strand 5
A
654 656anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
729 731first strand
Strand 2
A
737 739anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
587 595first strand
Strand 2
B
600 607anti-parallel
Strand 3
B
613 618anti-parallel
Strand 4
B
669 672anti-parallel
Strand 5
B
654 655anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
729 731first strand
Strand 2
B
737 739anti-parallel
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