Analysis of interatomic Contacts of Structural Units in PDB entry:
6MET

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MET entry

There are 5 chains in PDB entry 6MET (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	ASP 31	GLY 491
A	LYS 1	PRO 363
B	MET 1	ILE 9
B	ASP 11	ASN 13
B	TYR 15	GLN 313

There are 23 helices in PDB entry 6MET. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	63	72	Right-handed alpha
Helix 2	AA2	G	99	115	Right-handed alpha
Helix 3	AA3	G	334	353	Right-handed alpha
Helix 4	AA4	G	366	371	Right-handed alpha
Helix 5	AA5	G	385	389	Right-handed 310
Helix 6	AA6	G	470	477	Right-handed alpha
Helix 7	AA7	A	58	64	Right-handed 310
Helix 8	AA8	A	150	154	Right-handed 310
Helix 9	AA9	A	263	266	Right-handed 310
Helix 10	AB1	B	26	31	Right-handed alpha
Helix 11	AB2	B	32	58	Right-handed alpha
Helix 12	AB3	B	63	81	Right-handed alpha
Helix 13	AB4	B	82	91	Right-handed alpha
Helix 14	AB5	B	100	131	Right-handed alpha
Helix 15	AB6	B	132	140	Right-handed alpha
Helix 16	AB7	B	141	159	Right-handed alpha
Helix 17	AB8	B	160	165	Right-handed 310
Helix 18	AB9	B	186	203	Right-handed alpha
Helix 19	AC1	B	203	224	Right-handed alpha
Helix 20	AC2	B	227	260	Right-handed alpha
Helix 21	AC3	B	268	288	Right-handed alpha
Helix 22	AC4	B	291	300	Right-handed alpha
Helix 23	AC5	B	305	313	Right-handed alpha

There are 18 sheets in PDB entry 6MET. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	46	first strand
Strand 2	G	482	486	anti-parallel
Strand 3	G	223	228	anti-parallel
Strand 4	G	242	245	anti-parallel
Strand 5	G	83	84	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	52	55	first strand
Strand 2	G	215	218	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	196	202	first strand
Strand 2	G	119	125	anti-parallel
Strand 3	G	427	429	anti-parallel
Strand 4	G	419	420	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	273	first strand
Strand 2	G	284	287	anti-parallel
Strand 3	G	446	449	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	408	414	first strand
Strand 2	G	327	333	anti-parallel
Strand 3	G	294	297	anti-parallel
Strand 4	G	439	442	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	357	359	first strand
Strand 2	G	462	464	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	372	376	first strand
Strand 2	G	379	383	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	6	first strand
Strand 2	A	96	97	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	70	71	anti-parallel
Strand 3	A	55	56	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	44	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	A	27	30	anti-parallel
Strand 4	A	82	84	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	101	first strand
Strand 2	A	117	119	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	109	first strand
Strand 2	A	176	177	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	115	first strand
Strand 2	A	145	146	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	158	161	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	189	first strand
Strand 2	A	281	294	parallel
Strand 3	A	268	276	anti-parallel
Strand 4	A	209	217	anti-parallel
Strand 5	A	228	231	anti-parallel
Strand 6	A	237	238	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	189	first strand
Strand 2	A	281	294	parallel
Strand 3	A	301	306	anti-parallel
Strand 4	A	332	335	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	198	first strand
Strand 2	A	255	259	anti-parallel
Strand 3	A	248	249	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	328	first strand
Strand 2	A	314	318	anti-parallel
Strand 3	A	341	348	anti-parallel
Strand 4	A	353	361	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MET

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MET