Analysis of interatomic Contacts of Structural Units in PDB entry:
6MEZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MEZ entry

There are 2 chains in PDB entry 6MEZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 9	GLN 366
B	ASP 7	GLN 366

There are 16 helices in PDB entry 6MEZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	126	133	Right-handed alpha
Helix 2	AA2	A	155	173	Right-handed alpha
Helix 3	AA3	A	174	185	Right-handed alpha
Helix 4	AA4	A	188	196	Right-handed alpha
Helix 5	AA5	A	233	238	Right-handed alpha
Helix 6	AA6	A	244	248	Right-handed 310
Helix 7	AA7	A	292	299	Right-handed alpha
Helix 8	AA8	A	342	354	Right-handed alpha
Helix 9	AA9	B	126	133	Right-handed alpha
Helix 10	AB1	B	155	173	Right-handed alpha
Helix 11	AB2	B	174	185	Right-handed alpha
Helix 12	AB3	B	188	196	Right-handed alpha
Helix 13	AB4	B	233	238	Right-handed alpha
Helix 14	AB5	B	244	248	Right-handed 310
Helix 15	AB6	B	292	299	Right-handed alpha
Helix 16	AB7	B	342	354	Right-handed alpha

There are 6 sheets in PDB entry 6MEZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	200	first strand
Strand 2	A	216	229	anti-parallel
Strand 3	A	204	213	anti-parallel

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There are 15 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	200	first strand
Strand 2	A	216	229	anti-parallel
Strand 3	A	141	152	anti-parallel
Strand 4	A	108	122	anti-parallel
Strand 5	A	94	105	anti-parallel
Strand 6	A	77	89	anti-parallel
Strand 7	A	63	74	anti-parallel
Strand 8	A	46	58	anti-parallel
Strand 9	A	252	260	anti-parallel
Strand 10	A	265	273	anti-parallel
Strand 11	A	27	35	anti-parallel
Strand 12	A	10	19	anti-parallel
Strand 13	A	308	316	parallel
Strand 14	A	337	341	anti-parallel
Strand 15	A	332	334	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	281	first strand
Strand 2	A	284	287	anti-parallel
Strand 3	A	361	365	anti-parallel
Strand 4	A	322	327	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	200	first strand
Strand 2	B	216	229	anti-parallel
Strand 3	B	204	213	anti-parallel

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There are 15 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	200	first strand
Strand 2	B	216	229	anti-parallel
Strand 3	B	141	152	anti-parallel
Strand 4	B	108	122	anti-parallel
Strand 5	B	94	105	anti-parallel
Strand 6	B	77	89	anti-parallel
Strand 7	B	63	74	anti-parallel
Strand 8	B	46	58	anti-parallel
Strand 9	B	252	260	anti-parallel
Strand 10	B	265	273	anti-parallel
Strand 11	B	27	35	anti-parallel
Strand 12	B	10	19	anti-parallel
Strand 13	B	308	316	parallel
Strand 14	B	337	341	anti-parallel
Strand 15	B	332	334	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	281	first strand
Strand 2	B	284	287	anti-parallel
Strand 3	B	361	365	anti-parallel
Strand 4	B	322	327	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MEZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MEZ