Analysis of interatomic Contacts of Structural Units in PDB entry:
6MF2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MF2 entry

There is 1 chain in PDB entry 6MF2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	TYR 2332

There are 17 helices in PDB entry 6MF2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	163	170	Right-handed alpha
Helix 2	AA2	A	407	413	Right-handed alpha
Helix 3	AA3	A	497	501	Right-handed 310
Helix 4	AA4	A	516	520	Right-handed 310
Helix 5	AA5	A	538	544	Right-handed alpha
Helix 6	AA6	A	582	586	Right-handed 310
Helix 7	AA7	A	587	595	Right-handed alpha
Helix 8	AA8	A	605	611	Right-handed alpha
Helix 9	AA9	A	1886	1888	Right-handed 310
Helix 10	AB1	A	1892	1896	Right-handed 310
Helix 11	AB2	A	1913	1915	Right-handed 310
Helix 12	AB3	A	1949	1953	Right-handed 310
Helix 13	AB4	A	2002	2007	Right-handed alpha
Helix 14	AB5	A	2033	2037	Right-handed 310
Helix 15	AB6	A	2047	2051	Right-handed 310
Helix 16	AB7	A	2186	2188	Right-handed 310
Helix 17	AB8	A	2204	2208	Right-handed 310

There are 25 sheets in PDB entry 6MF2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	14	first strand
Strand 2	A	46	47	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	78	first strand
Strand 2	A	174	179	parallel
Strand 3	A	153	159	anti-parallel
Strand 4	A	99	100	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	197	first strand
Strand 2	A	253	257	parallel
Strand 3	A	296	298	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	203	first strand
Strand 2	A	230	232	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	247	first strand
Strand 2	A	322	326	parallel
Strand 3	A	304	310	anti-parallel
Strand 4	A	269	271	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	278	first strand
Strand 2	A	281	283	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	422	430	first strand
Strand 2	A	384	394	anti-parallel
Strand 3	A	463	468	parallel
Strand 4	A	508	510	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	460	461	first strand
Strand 2	A	513	514	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	476	477	first strand
Strand 2	A	528	534	anti-parallel
Strand 3	A	548	554	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	613	617	first strand
Strand 2	A	573	580	anti-parallel
Strand 3	A	634	641	parallel
Strand 4	A	674	681	anti-parallel
Strand 5	A	658	659	anti-parallel
Strand 6	A	664	665	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	667	670	first strand
Strand 2	A	649	653	anti-parallel
Strand 3	A	690	691	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1730	1737	first strand
Strand 2	A	1697	1707	anti-parallel
Strand 3	A	1770	1777	parallel
Strand 4	A	1812	1818	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1832	1837	first strand
Strand 2	A	1853	1858	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1874	1875	first strand
Strand 2	A	1940	1941	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1878	1880	first strand
Strand 2	A	1944	1946	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1883	1884	first strand
Strand 2	A	1917	1918	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1933	1934	first strand
Strand 2	A	2012	2016	parallel
Strand 3	A	1994	1998	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1954	1957	first strand
Strand 2	A	1975	1978	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1963	1966	first strand
Strand 2	A	1970	1973	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2023	2024	first strand
Strand 2	A	2166	2169	anti-parallel
Strand 3	A	2079	2084	anti-parallel
Strand 4	A	2138	2146	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2062	2064	first strand
Strand 2	A	2160	2162	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2071	2072	first strand
Strand 2	A	2148	2157	anti-parallel
Strand 3	A	2094	2106	anti-parallel
Strand 4	A	2089	2091	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2190	2192	first strand
Strand 2	A	2230	2233	anti-parallel
Strand 3	A	2305	2310	anti-parallel
Strand 4	A	2260	2264	anti-parallel
Strand 5	A	2272	2273	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2293	2295	first strand
Strand 2	A	2238	2246	anti-parallel
Strand 3	A	2320	2327	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2248	2249	first strand
Strand 2	A	2254	2257	anti-parallel
Strand 3	A	2313	2314	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MF2

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MF2