Analysis of interatomic Contacts of Structural Units in PDB entry:
6MF5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MF5 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 6MF5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 435VAL 704
B
 GLU 434VAL 704
C
 LEU 228SER 231
C
 PRO 233ALA 234
D
 LEU 228SER 231
D
 PRO 233ALA 234
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6MF5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
436 451Right-handed alpha
Helix 2
AA2
A
470 493Right-handed alpha
Helix 3
AA3
A
579 597Right-handed alpha
Helix 4
AA4
A
648 650Right-handed 310
Helix 5
AA5
A
667 674Right-handed alpha
Helix 6
AA6
A
683 699Right-handed alpha
Helix 7
AA7
B
436 452Right-handed alpha
Helix 8
AA8
B
470 497Right-handed alpha
Helix 9
AA9
B
520 525Right-handed alpha
Helix 10
AB1
B
579 579Right-handed alpha
Helix 11
AB2
B
581 597Right-handed alpha
Helix 12
AB3
B
667 674Right-handed alpha
Helix 13
AB4
B
684 701Right-handed alpha
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There are 4 sheets in PDB entry 6MF5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 465first strand
Strand 2
A
615 620anti-parallel
Strand 3
A
624 629anti-parallel
Strand 4
A
634 638anti-parallel
Strand 5
A
643 647anti-parallel
Strand 6
A
652 656anti-parallel
Strand 7
A
662 666anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
564 571first strand
Strand 2
A
553 560anti-parallel
Strand 3
A
544 547anti-parallel
Strand 4
A
535 538anti-parallel
Strand 5
A
525 530anti-parallel
Strand 6
A
514 520anti-parallel
Strand 7
C
229 230anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
464 465first strand
Strand 2
B
615 620anti-parallel
Strand 3
B
624 629anti-parallel
Strand 4
B
634 638anti-parallel
Strand 5
B
643 647anti-parallel
Strand 6
B
652 656anti-parallel
Strand 7
B
662 666anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
565 571first strand
Strand 2
B
553 559anti-parallel
Strand 3
B
544 547anti-parallel
Strand 4
B
535 538anti-parallel
Strand 5
B
526 530anti-parallel
Strand 6
B
514 519anti-parallel
Strand 7
D
229 230anti-parallel
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