Analysis of interatomic Contacts of Structural Units in PDB entry:
6MF6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MF6 entry

There are 4 chains in PDB entry 6MF6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 451ASP 705
B
 GLN 452ASP 705
D
 ALA 82VAL 91
C
 ARG 83GLN 90
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 6MF6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
470 498Right-handed alpha
Helix 2
AA2
A
576 594Right-handed alpha
Helix 3
AA3
A
667 674Right-handed alpha
Helix 4
AA4
A
679 682Right-handed 310
Helix 5
AA5
A
683 700Right-handed alpha
Helix 6
AA6
B
470 498Right-handed alpha
Helix 7
AA7
B
576 597Right-handed alpha
Helix 8
AA8
B
667 674Right-handed alpha
Helix 9
AA9
B
683 699Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 6MF6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 463first strand
Strand 2
A
615 621anti-parallel
Strand 3
A
624 629anti-parallel
Strand 4
A
634 638anti-parallel
Strand 5
A
643 647anti-parallel
Strand 6
A
652 656anti-parallel
Strand 7
A
662 666anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
514 518first strand
Strand 2
A
526 530anti-parallel
Strand 3
A
535 538anti-parallel
Strand 4
A
544 547anti-parallel
Strand 5
A
553 560anti-parallel
Strand 6
A
564 566anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
514 518first strand
Strand 2
A
526 530anti-parallel
Strand 3
A
535 538anti-parallel
Strand 4
A
544 547anti-parallel
Strand 5
A
553 560anti-parallel
Strand 6
A
569 571anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
514 518first strand
Strand 2
B
527 530anti-parallel
Strand 3
B
535 538anti-parallel
Strand 4
B
544 547anti-parallel
Strand 5
B
553 559anti-parallel
Strand 6
B
565 571anti-parallel
Strand 7
D
89 90parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
615 620first strand
Strand 2
B
624 629anti-parallel
Strand 3
B
634 638anti-parallel
Strand 4
B
643 646anti-parallel
Strand 5
B
652 657anti-parallel
Strand 6
B
661 666anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il