Analysis of interatomic Contacts of Structural Units in PDB entry:
6MFB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MFB entry

There are 4 chains in PDB entry 6MFB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 2	PRO 385
C	MET 1	PRO 385
B	MET 1	PRO 385
D	MET 1	ASP 386

There are 68 helices in PDB entry 6MFB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	11	Right-handed 310
Helix 2	AA2	A	30	36	Right-handed alpha
Helix 3	AA3	A	46	65	Right-handed alpha
Helix 4	AA4	A	78	90	Right-handed alpha
Helix 5	AA5	A	102	115	Right-handed alpha
Helix 6	AA6	A	131	143	Right-handed alpha
Helix 7	AA7	A	164	172	Right-handed alpha
Helix 8	AA8	A	219	229	Right-handed alpha
Helix 9	AA9	A	235	238	Right-handed 310
Helix 10	AB1	A	239	247	Right-handed alpha
Helix 11	AB2	A	261	279	Right-handed alpha
Helix 12	AB3	A	279	301	Right-handed alpha
Helix 13	AB4	A	309	313	Right-handed 310
Helix 14	AB5	A	327	340	Right-handed alpha
Helix 15	AB6	A	347	351	Right-handed 310
Helix 16	AB7	A	360	364	Right-handed 310
Helix 17	AB8	A	365	384	Right-handed alpha
Helix 18	AB9	C	7	11	Right-handed 310
Helix 19	AC1	C	30	36	Right-handed alpha
Helix 20	AC2	C	46	65	Right-handed alpha
Helix 21	AC3	C	78	90	Right-handed alpha
Helix 22	AC4	C	102	115	Right-handed alpha
Helix 23	AC5	C	131	143	Right-handed alpha
Helix 24	AC6	C	164	172	Right-handed alpha
Helix 25	AC7	C	219	228	Right-handed alpha
Helix 26	AC8	C	235	238	Right-handed 310
Helix 27	AC9	C	239	247	Right-handed alpha
Helix 28	AD1	C	261	279	Right-handed alpha
Helix 29	AD2	C	279	301	Right-handed alpha
Helix 30	AD3	C	309	313	Right-handed 310
Helix 31	AD4	C	327	340	Right-handed alpha
Helix 32	AD5	C	347	351	Right-handed 310
Helix 33	AD6	C	360	364	Right-handed 310
Helix 34	AD7	C	365	384	Right-handed alpha
Helix 35	AD8	B	7	12	Right-handed 310
Helix 36	AD9	B	30	38	Right-handed alpha
Helix 37	AE1	B	46	65	Right-handed alpha
Helix 38	AE2	B	78	90	Right-handed alpha
Helix 39	AE3	B	102	115	Right-handed alpha
Helix 40	AE4	B	131	143	Right-handed alpha
Helix 41	AE5	B	164	172	Right-handed alpha
Helix 42	AE6	B	219	229	Right-handed alpha
Helix 43	AE7	B	235	238	Right-handed 310
Helix 44	AE8	B	239	247	Right-handed alpha
Helix 45	AE9	B	261	279	Right-handed alpha
Helix 46	AF1	B	279	300	Right-handed alpha
Helix 47	AF2	B	309	313	Right-handed 310
Helix 48	AF3	B	327	340	Right-handed alpha
Helix 49	AF4	B	347	351	Right-handed 310
Helix 50	AF5	B	360	364	Right-handed 310
Helix 51	AF6	B	365	384	Right-handed alpha
Helix 52	AF7	D	7	11	Right-handed 310
Helix 53	AF8	D	30	36	Right-handed alpha
Helix 54	AF9	D	46	64	Right-handed alpha
Helix 55	AG1	D	78	90	Right-handed alpha
Helix 56	AG2	D	102	115	Right-handed alpha
Helix 57	AG3	D	131	143	Right-handed alpha
Helix 58	AG4	D	164	172	Right-handed alpha
Helix 59	AG5	D	219	229	Right-handed alpha
Helix 60	AG6	D	235	238	Right-handed 310
Helix 61	AG7	D	239	247	Right-handed alpha
Helix 62	AG8	D	261	279	Right-handed alpha
Helix 63	AG9	D	279	300	Right-handed alpha
Helix 64	AH1	D	309	313	Right-handed 310
Helix 65	AH2	D	327	340	Right-handed alpha
Helix 66	AH3	D	347	351	Right-handed 310
Helix 67	AH4	D	360	364	Right-handed 310
Helix 68	AH5	D	365	384	Right-handed alpha

There are 12 sheets in PDB entry 6MFB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	75	first strand
Strand 2	A	213	218	anti-parallel
Strand 3	A	198	200	anti-parallel
Strand 4	A	175	179	parallel
Strand 5	A	146	150	parallel
Strand 6	A	95	100	parallel
Strand 7	A	118	123	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	321	first strand
Strand 2	A	354	358	anti-parallel
Strand 3	A	344	345	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	21	first strand
Strand 2	C	341	342	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	75	first strand
Strand 2	C	213	218	anti-parallel
Strand 3	C	198	200	anti-parallel
Strand 4	C	175	179	parallel
Strand 5	C	146	150	parallel
Strand 6	C	95	100	parallel
Strand 7	C	118	123	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	317	321	first strand
Strand 2	C	354	358	anti-parallel
Strand 3	C	344	345	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	21	first strand
Strand 2	B	341	342	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	75	first strand
Strand 2	B	213	218	anti-parallel
Strand 3	B	198	200	anti-parallel
Strand 4	B	175	179	parallel
Strand 5	B	146	150	parallel
Strand 6	B	95	100	parallel
Strand 7	B	118	123	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	153	first strand
Strand 2	B	158	159	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	320	first strand
Strand 2	B	355	358	anti-parallel
Strand 3	B	344	345	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	75	first strand
Strand 2	D	213	218	anti-parallel
Strand 3	D	198	200	anti-parallel
Strand 4	D	175	179	parallel
Strand 5	D	146	150	parallel
Strand 6	D	95	100	parallel
Strand 7	D	118	123	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	153	first strand
Strand 2	D	158	159	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	317	321	first strand
Strand 2	D	354	358	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MFB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MFB