Analysis of interatomic Contacts of Structural Units in PDB entry:
6MFD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MFD entry

There are 2 chains in PDB entry 6MFD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 HIS 499ARG 693
A
 HIS 499ARG 693
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6MFD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
505 507Right-handed 310
Helix 2
AA2
B
508 520Right-handed alpha
Helix 3
AA3
B
521 525Right-handed 310
Helix 4
AA4
B
527 538Right-handed alpha
Helix 5
AA5
B
562 567Right-handed 310
Helix 6
AA6
B
574 578Right-handed 310
Helix 7
AA7
B
594 597Right-handed 310
Helix 8
AA8
B
601 616Right-handed alpha
Helix 9
AA9
B
630 636Right-handed alpha
Helix 10
AB1
B
640 646Right-handed alpha
Helix 11
AB2
B
656 662Right-handed alpha
Helix 12
AB3
B
678 682Right-handed 310
Helix 13
AB4
A
505 507Right-handed 310
Helix 14
AB5
A
508 520Right-handed alpha
Helix 15
AB6
A
521 525Right-handed 310
Helix 16
AB7
A
527 538Right-handed alpha
Helix 17
AB8
A
539 541Right-handed 310
Helix 18
AB9
A
562 567Right-handed 310
Helix 19
AC1
A
571 578Right-handed 310
Helix 20
AC2
A
594 597Right-handed 310
Helix 21
AC3
A
600 616Right-handed alpha
Helix 22
AC4
A
633 638Right-handed 310
Helix 23
AC5
A
640 646Right-handed alpha
Helix 24
AC6
A
654 662Right-handed alpha
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There are 2 sheets in PDB entry 6MFD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
501 503first strand
Strand 2
B
542 547anti-parallel
Strand 3
B
550 560anti-parallel
Strand 4
B
584 592anti-parallel
Strand 5
B
621 626parallel
Strand 6
B
685 691anti-parallel
Strand 7
B
665 671anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
500 503first strand
Strand 2
A
543 547anti-parallel
Strand 3
A
550 560anti-parallel
Strand 4
A
584 592anti-parallel
Strand 5
A
621 626parallel
Strand 6
A
685 691anti-parallel
Strand 7
A
665 671anti-parallel
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