Analysis of interatomic Contacts of Structural Units in PDB entry:
6MFH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MFH entry

There is 1 chain in PDB entry 6MFH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6MFH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 19Right-handed alpha
Helix 2
AA2
A
20 24Right-handed 310
Helix 3
AA3
A
53 62Right-handed alpha
Helix 4
AA4
A
78 86Right-handed alpha
Helix 5
AA5
A
86 101Right-handed alpha
Helix 6
AA6
A
112 115Right-handed 310
Helix 7
AA7
A
133 152Right-handed alpha
Helix 8
AA8
A
171 178Right-handed alpha
Helix 9
AA9
A
180 194Right-handed alpha
Helix 10
AB1
A
215 222Right-handed 310
Helix 11
AB2
A
228 231Right-handed 310
Helix 12
AB3
A
232 240Right-handed alpha
Helix 13
AB4
A
247 252Right-handed alpha
Helix 14
AB5
A
255 260Right-handed alpha
Helix 15
AB6
A
262 277Right-handed alpha
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There are 2 sheets in PDB entry 6MFH. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
26 31parallel
Strand 3
A
2 8parallel
Strand 4
A
66 69parallel
Strand 5
A
104 110parallel
Strand 6
A
156 162parallel
Strand 7
A
199 204parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 124first strand
Strand 2
A
213 214parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il