Analysis of interatomic Contacts of Structural Units in PDB entry:
6MFI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MFI entry

There is 1 chain in PDB entry 6MFI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 31ALA 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 6MFI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 43Right-handed alpha
Helix 2
AA2
A
90 102Right-handed alpha
Helix 3
AA3
A
105 107Right-handed 310
Helix 4
AA4
A
118 123Right-handed alpha
Helix 5
AA5
A
124 133Right-handed alpha
Helix 6
AA6
A
139 149Right-handed alpha
Helix 7
AA7
A
229 232Right-handed 310
Helix 8
AA8
A
233 249Right-handed alpha
Helix 9
AA9
A
259 263Right-handed 310
Helix 10
AB1
A
264 272Right-handed alpha
Helix 11
AB2
A
279 298Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6MFI. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
62 64anti-parallel
Strand 3
A
73 77anti-parallel
Strand 4
A
80 84anti-parallel
Strand 5
A
109 113parallel
Strand 6
A
135 138parallel
Strand 7
A
169 172parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 181first strand
Strand 2
A
184 190anti-parallel
Strand 3
A
199 205anti-parallel
Strand 4
A
212 216anti-parallel
Strand 5
A
254 256parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il