Analysis of interatomic Contacts of Structural Units in PDB entry:
6MFK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MFK entry

There is 1 chain in PDB entry 6MFK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -1ILE 208
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6MFK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 17Right-handed 310
Helix 2
AA2
A
39 42Right-handed 310
Helix 3
AA3
A
88 92Right-handed 310
Helix 4
AA4
A
95 99Right-handed 310
Helix 5
AA5
A
166 177Right-handed alpha
Helix 6
AA6
A
178 181Right-handed 310
Helix 7
AA7
A
182 194Right-handed alpha
Helix 8
AA8
A
197 207Right-handed alpha
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There are 3 sheets in PDB entry 6MFK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 13first strand
Strand 2
A
30 31anti-parallel
Strand 3
A
64 65parallel
Strand 4
A
118 119parallel
Strand 5
A
136 137parallel
Strand 6
A
151 154parallel
Strand 7
A
159 163anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 25first strand
Strand 2
A
57 59parallel
Strand 3
A
111 113parallel
Strand 4
A
130 131parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
70 72parallel
Strand 3
A
124 125parallel
Strand 4
A
142 143parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il