Analysis of interatomic Contacts of Structural Units in PDB entry:
6MFL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MFL entry

There are 2 chains in PDB entry 6MFL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 39HIS 325
B
 GLU 39HIS 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 6MFL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 73Right-handed alpha
Helix 2
AA2
A
86 88Right-handed 310
Helix 3
AA3
A
89 95Right-handed alpha
Helix 4
AA4
A
108 116Right-handed alpha
Helix 5
AA5
A
123 128Right-handed 310
Helix 6
AA6
A
129 137Right-handed alpha
Helix 7
AA7
A
152 168Right-handed alpha
Helix 8
AA8
A
170 193Right-handed alpha
Helix 9
AA9
A
218 226Right-handed alpha
Helix 10
AB1
A
244 251Right-handed alpha
Helix 11
AB2
A
261 266Right-handed alpha
Helix 12
AB3
A
272 276Right-handed 310
Helix 13
AB4
A
278 283Right-handed alpha
Helix 14
AB5
A
284 290Right-handed alpha
Helix 15
AB6
A
296 301Right-handed alpha
Helix 16
AB7
A
306 321Right-handed alpha
Helix 17
AB8
B
63 73Right-handed alpha
Helix 18
AB9
B
86 88Right-handed 310
Helix 19
AC1
B
89 94Right-handed alpha
Helix 20
AC2
B
108 116Right-handed alpha
Helix 21
AC3
B
123 128Right-handed 310
Helix 22
AC4
B
129 137Right-handed alpha
Helix 23
AC5
B
152 169Right-handed alpha
Helix 24
AC6
B
170 193Right-handed alpha
Helix 25
AC7
B
218 226Right-handed alpha
Helix 26
AC8
B
244 251Right-handed alpha
Helix 27
AC9
B
261 266Right-handed alpha
Helix 28
AD1
B
272 276Right-handed 310
Helix 29
AD2
B
278 283Right-handed alpha
Helix 30
AD3
B
284 289Right-handed alpha
Helix 31
AD4
B
296 301Right-handed alpha
Helix 32
AD5
B
306 322Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 6MFL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 45first strand
Strand 2
A
48 52anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
119 122parallel
Strand 3
A
139 141parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 80first strand
Strand 2
A
99 100parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 103first strand
Strand 2
A
106 107anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
198 205parallel
Strand 3
A
208 212anti-parallel
Strand 4
A
241 242anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
198 205parallel
Strand 3
A
255 260parallel
Strand 4
A
292 294parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 45first strand
Strand 2
B
48 52anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 61first strand
Strand 2
B
119 122parallel
Strand 3
B
139 141parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 80first strand
Strand 2
B
99 100parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 103first strand
Strand 2
B
106 107anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 212first strand
Strand 2
B
198 205anti-parallel
Strand 3
B
228 229parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 212first strand
Strand 2
B
198 205anti-parallel
Strand 3
B
255 260parallel
Strand 4
B
292 294parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il