Analysis of interatomic Contacts of Structural Units in PDB entry:
6MFS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MFS entry

There is 1 chain in PDB entry 6MFS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 6MFS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 34Right-handed alpha
Helix 2
AA2
A
36 41Right-handed 310
Helix 3
AA3
A
43 45Right-handed 310
Helix 4
AA4
A
55 59Right-handed 310
Helix 5
AA5
A
67 72Right-handed 310
Helix 6
AA6
A
107 119Right-handed alpha
Helix 7
AA7
A
123 125Right-handed 310
Helix 8
AA8
A
208 225Right-handed alpha
Helix 9
AA9
A
231 248Right-handed alpha
Helix 10
AB1
A
261 265Right-handed 310
Helix 11
AB2
A
267 271Right-handed 310
Helix 12
AB3
A
274 286Right-handed alpha
Helix 13
AB4
A
290 305Right-handed alpha
Helix 14
AB5
A
354 356Right-handed 310
Helix 15
AB6
A
370 374Right-handed 310
Helix 16
AB7
A
384 399Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6MFS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 19first strand
Strand 2
A
4 10anti-parallel
Strand 3
A
78 83parallel
Strand 4
A
47 51anti-parallel
Strand 5
A
60 61anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 103first strand
Strand 2
A
85 91anti-parallel
Strand 3
A
190 195parallel
Strand 4
A
127 131anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 318first strand
Strand 2
A
325 332anti-parallel
Strand 3
A
336 341anti-parallel
Strand 4
A
347 352anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 362first strand
Strand 2
A
365 369anti-parallel
Strand 3
A
378 381anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il