Analysis of interatomic Contacts of Structural Units in PDB entry:
6MFV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MFV entry

There are 2 chains in PDB entry 6MFV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 102	ASP 748
B	ALA 102	TYR 672

There are140 helices in PDB entry 6MFV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	118	127	Right-handed alpha
Helix 2	AA2	A	141	150	Right-handed alpha
Helix 3	AA3	A	163	179	Right-handed alpha
Helix 4	AA4	A	184	190	Right-handed alpha
Helix 5	AA5	A	195	208	Right-handed alpha
Helix 6	AA6	A	220	229	Right-handed alpha
Helix 7	AA7	A	265	275	Right-handed alpha
Helix 8	AA8	A	283	293	Right-handed alpha
Helix 9	AA9	A	295	304	Right-handed alpha
Helix 10	AB1	A	316	326	Right-handed alpha
Helix 11	AB2	A	329	340	Right-handed alpha
Helix 12	AB3	A	347	356	Right-handed alpha
Helix 13	AB4	A	359	369	Right-handed alpha
Helix 14	AB5	A	382	390	Right-handed alpha
Helix 15	AB6	A	396	412	Right-handed alpha
Helix 16	AB7	A	413	427	Right-handed alpha
Helix 17	AB8	A	429	443	Right-handed alpha
Helix 18	AB9	A	444	447	Right-handed 310
Helix 19	AC1	A	451	461	Right-handed alpha
Helix 20	AC2	A	465	479	Right-handed alpha
Helix 21	AC3	A	481	492	Right-handed alpha
Helix 22	AC4	A	497	514	Right-handed alpha
Helix 23	AC5	A	517	527	Right-handed alpha
Helix 24	AC6	A	530	536	Right-handed alpha
Helix 25	AC7	A	537	555	Right-handed alpha
Helix 26	AC8	A	559	576	Right-handed alpha
Helix 27	AC9	A	577	595	Right-handed alpha
Helix 28	AD1	A	598	616	Right-handed alpha
Helix 29	AD2	A	617	635	Right-handed alpha
Helix 30	AD3	A	637	656	Right-handed alpha
Helix 31	AD4	A	657	676	Right-handed alpha
Helix 32	AD5	A	677	696	Right-handed alpha
Helix 33	AD6	A	697	714	Right-handed alpha
Helix 34	AD7	A	722	729	Right-handed alpha
Helix 35	AD8	A	736	748	Right-handed alpha
Helix 36	AD9	B	118	127	Right-handed alpha
Helix 37	AE1	B	141	150	Right-handed alpha
Helix 38	AE2	B	163	179	Right-handed alpha
Helix 39	AE3	B	184	190	Right-handed alpha
Helix 40	AE4	B	196	208	Right-handed alpha
Helix 41	AE5	B	220	233	Right-handed alpha
Helix 42	AE6	B	265	275	Right-handed alpha
Helix 43	AE7	B	283	289	Right-handed alpha
Helix 44	AE8	B	295	304	Right-handed alpha
Helix 45	AE9	B	316	326	Right-handed alpha
Helix 46	AF1	B	329	340	Right-handed alpha
Helix 47	AF2	B	347	356	Right-handed alpha
Helix 48	AF3	B	359	369	Right-handed alpha
Helix 49	AF4	B	382	390	Right-handed alpha
Helix 50	AF5	B	396	412	Right-handed alpha
Helix 51	AF6	B	413	427	Right-handed alpha
Helix 52	AF7	B	429	443	Right-handed alpha
Helix 53	AF8	B	444	447	Right-handed 310
Helix 54	AF9	B	451	461	Right-handed alpha
Helix 55	AG1	B	465	479	Right-handed alpha
Helix 56	AG2	B	481	492	Right-handed alpha
Helix 57	AG3	B	497	514	Right-handed alpha
Helix 58	AG4	B	517	527	Right-handed alpha
Helix 59	AG5	B	530	536	Right-handed alpha
Helix 60	AG6	B	537	555	Right-handed alpha
Helix 61	AG7	B	559	576	Right-handed alpha
Helix 62	AG8	B	577	595	Right-handed alpha
Helix 63	AG9	B	598	616	Right-handed alpha
Helix 64	AH1	B	617	635	Right-handed alpha
Helix 65	AH2	B	637	656	Right-handed alpha
Helix 66	AH3	B	657	676	Right-handed alpha
Helix 67	AH4	B	677	696	Right-handed alpha
Helix 68	AH5	B	697	714	Right-handed alpha
Helix 69	AH6	B	722	729	Right-handed alpha
Helix 70	AH7	B	736	748	Right-handed alpha
Helix 71	AH8	C	118	127	Right-handed alpha
Helix 72	AH9	C	141	150	Right-handed alpha
Helix 73	AI1	C	163	179	Right-handed alpha
Helix 74	AI2	C	184	190	Right-handed alpha
Helix 75	AI3	C	195	208	Right-handed alpha
Helix 76	AI4	C	220	229	Right-handed alpha
Helix 77	AI5	C	265	275	Right-handed alpha
Helix 78	AI6	C	281	289	Right-handed alpha
Helix 79	AI7	C	295	304	Right-handed alpha
Helix 80	AI8	C	316	326	Right-handed alpha
Helix 81	AI9	C	329	340	Right-handed alpha
Helix 82	AJ1	C	347	356	Right-handed alpha
Helix 83	AJ2	C	359	369	Right-handed alpha
Helix 84	AJ3	C	382	390	Right-handed alpha
Helix 85	AJ4	C	396	412	Right-handed alpha
Helix 86	AJ5	C	413	427	Right-handed alpha
Helix 87	AJ6	C	429	443	Right-handed alpha
Helix 88	AJ7	C	444	447	Right-handed 310
Helix 89	AJ8	C	451	461	Right-handed alpha
Helix 90	AJ9	C	465	479	Right-handed alpha
Helix 91	AK1	C	481	492	Right-handed alpha
Helix 92	AK2	C	497	514	Right-handed alpha
Helix 93	AK3	C	517	527	Right-handed alpha
Helix 94	AK4	C	530	536	Right-handed alpha
Helix 95	AK5	C	537	555	Right-handed alpha
Helix 96	AK6	C	559	576	Right-handed alpha
Helix 97	AK7	C	577	595	Right-handed alpha
Helix 98	AK8	C	598	615	Right-handed alpha
Helix 99	AK9	C	617	635	Right-handed alpha
Helix 100	AL1	C	637	656	Right-handed alpha
Helix 101	AL2	C	657	676	Right-handed alpha
Helix 102	AL3	C	677	696	Right-handed alpha
Helix 103	AL4	C	697	714	Right-handed alpha
Helix 104	AL5	C	722	729	Right-handed alpha
Helix 105	AL6	C	736	748	Right-handed alpha
Helix 106	AL7	D	118	127	Right-handed alpha
Helix 107	AL8	D	141	150	Right-handed alpha
Helix 108	AL9	D	163	179	Right-handed alpha
Helix 109	AM1	D	184	190	Right-handed alpha
Helix 110	AM2	D	195	208	Right-handed alpha
Helix 111	AM3	D	220	229	Right-handed alpha
Helix 112	AM4	D	265	275	Right-handed alpha
Helix 113	AM5	D	281	293	Right-handed alpha
Helix 114	AM6	D	295	304	Right-handed alpha
Helix 115	AM7	D	316	326	Right-handed alpha
Helix 116	AM8	D	329	340	Right-handed alpha
Helix 117	AM9	D	347	356	Right-handed alpha
Helix 118	AN1	D	359	369	Right-handed alpha
Helix 119	AN2	D	382	390	Right-handed alpha
Helix 120	AN3	D	396	412	Right-handed alpha
Helix 121	AN4	D	413	427	Right-handed alpha
Helix 122	AN5	D	429	443	Right-handed alpha
Helix 123	AN6	D	444	447	Right-handed 310
Helix 124	AN7	D	451	461	Right-handed alpha
Helix 125	AN8	D	465	479	Right-handed alpha
Helix 126	AN9	D	481	492	Right-handed alpha
Helix 127	AO1	D	497	514	Right-handed alpha
Helix 128	AO2	D	517	527	Right-handed alpha
Helix 129	AO3	D	530	536	Right-handed alpha
Helix 130	AO4	D	537	555	Right-handed alpha
Helix 131	AO5	D	559	576	Right-handed alpha
Helix 132	AO6	D	577	595	Right-handed alpha
Helix 133	AO7	D	598	616	Right-handed alpha
Helix 134	AO8	D	617	635	Right-handed alpha
Helix 135	AO9	D	637	656	Right-handed alpha
Helix 136	AP1	D	657	676	Right-handed alpha
Helix 137	AP2	D	677	696	Right-handed alpha
Helix 138	AP3	D	697	714	Right-handed alpha
Helix 139	AP4	D	722	729	Right-handed alpha
Helix 140	AP5	D	736	748	Right-handed alpha

There are 8 sheets in PDB entry 6MFV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	157	first strand
Strand 2	A	211	215	parallel
Strand 3	A	240	245	parallel
Strand 4	A	131	135	parallel
Strand 5	A	256	260	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	375	first strand
Strand 2	A	378	381	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	157	first strand
Strand 2	B	211	215	parallel
Strand 3	B	240	245	parallel
Strand 4	B	131	135	parallel
Strand 5	B	256	260	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	375	first strand
Strand 2	B	378	381	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	157	first strand
Strand 2	C	211	215	parallel
Strand 3	C	240	245	parallel
Strand 4	C	131	135	parallel
Strand 5	C	256	260	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	372	375	first strand
Strand 2	C	378	381	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	157	first strand
Strand 2	D	211	215	parallel
Strand 3	D	240	245	parallel
Strand 4	D	131	135	parallel
Strand 5	D	256	260	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	372	375	first strand
Strand 2	D	378	381	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MFV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MFV