Analysis of interatomic Contacts of Structural Units in PDB entry:
6MFW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MFW entry

There is 1 chain in PDB entry 6MFW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 1199
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 6MFW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 24Right-handed alpha
Helix 2
AA2
A
58 65Right-handed alpha
Helix 3
AA3
A
84 92Right-handed alpha
Helix 4
AA4
A
125 150Right-handed alpha
Helix 5
AA5
A
166 174Right-handed 310
Helix 6
AA6
A
180 191Right-handed alpha
Helix 7
AA7
A
204 216Right-handed alpha
Helix 8
AA8
A
231 248Right-handed alpha
Helix 9
AA9
A
263 277Right-handed alpha
Helix 10
AB1
A
288 299Right-handed alpha
Helix 11
AB2
A
307 312Right-handed alpha
Helix 12
AB3
A
313 315Right-handed 310
Helix 13
AB4
A
325 329Right-handed 310
Helix 14
AB5
A
365 379Right-handed alpha
Helix 15
AB6
A
395 407Right-handed alpha
Helix 16
AB7
A
416 421Right-handed alpha
Helix 17
AB8
A
422 434Right-handed alpha
Helix 18
AB9
A
442 449Right-handed alpha
Helix 19
AC1
A
483 487Right-handed 310
Helix 20
AC2
A
545 552Right-handed alpha
Helix 21
AC3
A
585 587Right-handed 310
Helix 22
AC4
A
596 599Right-handed 310
Helix 23
AC5
A
600 606Right-handed alpha
Helix 24
AC6
A
638 647Right-handed alpha
Helix 25
AC7
A
651 655Right-handed 310
Helix 26
AC8
A
674 678Right-handed 310
Helix 27
AC9
A
697 711Right-handed alpha
Helix 28
AD1
A
728 741Right-handed alpha
Helix 29
AD2
A
747 754Right-handed alpha
Helix 30
AD3
A
756 765Right-handed alpha
Helix 31
AD4
A
787 800Right-handed alpha
Helix 32
AD5
A
819 834Right-handed alpha
Helix 33
AD6
A
835 837Right-handed 310
Helix 34
AD7
A
866 868Right-handed 310
Helix 35
AD8
A
869 878Right-handed alpha
Helix 36
AD9
A
912 928Right-handed alpha
Helix 37
AE1
A
938 950Right-handed alpha
Helix 38
AE2
A
952 966Right-handed alpha
Helix 39
AE3
A
996 1010Right-handed alpha
Helix 40
AE4
A
1013 1029Right-handed alpha
Helix 41
AE5
A
1047 1051Right-handed 310
Helix 42
AE6
A
1072 1090Right-handed alpha
Helix 43
AE7
A
1094 1103Right-handed alpha
Helix 44
AE8
A
1126 1131Right-handed alpha
Helix 45
AE9
A
1167 1188Right-handed alpha
Helix 46
AF1
A
1192 1196Right-handed 310
Back to top of page

There are 13 sheets in PDB entry 6MFW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
3 8parallel
Strand 3
A
47 51parallel
Strand 4
A
69 73parallel
Strand 5
A
97 102anti-parallel
Strand 6
A
112 117anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
A
164 165parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 230first strand
Strand 2
A
220 224anti-parallel
Strand 3
A
411 414parallel
Strand 4
A
386 389parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 282first strand
Strand 2
A
255 259parallel
Strand 3
A
303 306parallel
Strand 4
A
319 322parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 350first strand
Strand 2
A
360 364anti-parallel
Strand 3
A
541 542anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 441first strand
Strand 2
A
458 462parallel
Strand 3
A
476 481parallel
Strand 4
A
491 494anti-parallel
Strand 5
A
506 507anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 516first strand
Strand 2
A
529 535anti-parallel
Strand 3
A
562 572anti-parallel
Strand 4
A
553 555anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 516first strand
Strand 2
A
529 535anti-parallel
Strand 3
A
562 572anti-parallel
Strand 4
A
578 583anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
588 589first strand
Strand 2
A
594 595anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
612 619first strand
Strand 2
A
625 632anti-parallel
Strand 3
A
658 662parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
859 864first strand
Strand 2
A
889 895parallel
Strand 3
A
900 907anti-parallel
Strand 4
A
807 814anti-parallel
Strand 5
A
1132 1135anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
839 844first strand
Strand 2
A
847 852anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
988 995first strand
Strand 2
A
1154 1162anti-parallel
Strand 3
A
1144 1151anti-parallel
Strand 4
A
1116 1121parallel
Strand 5
A
1035 1042parallel
Strand 6
A
1059 1066anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il