Analysis of interatomic Contacts of Structural Units in PDB entry:
6MFY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MFY entry

There is 1 chain in PDB entry 6MFY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLN 1258

There are 61 helices in PDB entry 6MFY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	24	Right-handed alpha
Helix 2	AA2	A	58	65	Right-handed alpha
Helix 3	AA3	A	84	92	Right-handed alpha
Helix 4	AA4	A	125	150	Right-handed alpha
Helix 5	AA5	A	166	177	Right-handed 310
Helix 6	AA6	A	180	191	Right-handed alpha
Helix 7	AA7	A	204	214	Right-handed alpha
Helix 8	AA8	A	231	248	Right-handed alpha
Helix 9	AA9	A	263	277	Right-handed alpha
Helix 10	AB1	A	288	299	Right-handed alpha
Helix 11	AB2	A	311	315	Right-handed 310
Helix 12	AB3	A	325	329	Right-handed 310
Helix 13	AB4	A	365	380	Right-handed alpha
Helix 14	AB5	A	396	408	Right-handed alpha
Helix 15	AB6	A	422	434	Right-handed alpha
Helix 16	AB7	A	441	450	Right-handed alpha
Helix 17	AB8	A	483	487	Right-handed 310
Helix 18	AB9	A	545	552	Right-handed alpha
Helix 19	AC1	A	596	599	Right-handed 310
Helix 20	AC2	A	600	606	Right-handed alpha
Helix 21	AC3	A	638	648	Right-handed alpha
Helix 22	AC4	A	651	655	Right-handed 310
Helix 23	AC5	A	674	678	Right-handed 310
Helix 24	AC6	A	697	712	Right-handed alpha
Helix 25	AC7	A	721	725	Right-handed 310
Helix 26	AC8	A	728	743	Right-handed alpha
Helix 27	AC9	A	747	754	Right-handed alpha
Helix 28	AD1	A	756	764	Right-handed alpha
Helix 29	AD2	A	787	799	Right-handed alpha
Helix 30	AD3	A	819	834	Right-handed alpha
Helix 31	AD4	A	835	837	Right-handed 310
Helix 32	AD5	A	866	868	Right-handed 310
Helix 33	AD6	A	869	876	Right-handed alpha
Helix 34	AD7	A	912	928	Right-handed alpha
Helix 35	AD8	A	938	950	Right-handed alpha
Helix 36	AD9	A	952	967	Right-handed alpha
Helix 37	AE1	A	996	1010	Right-handed alpha
Helix 38	AE2	A	1013	1030	Right-handed alpha
Helix 39	AE3	A	1047	1051	Right-handed 310
Helix 40	AE4	A	1072	1090	Right-handed alpha
Helix 41	AE5	A	1094	1102	Right-handed alpha
Helix 42	AE6	A	1126	1131	Right-handed alpha
Helix 43	AE7	A	1167	1187	Right-handed alpha
Helix 44	AE8	A	1192	1196	Right-handed 310
Helix 45	AE9	A	1200	1212	Right-handed alpha
Helix 46	AF1	A	1222	1234	Right-handed alpha
Helix 47	AF2	A	1248	1265	Right-handed alpha
Helix 48	AF3	A	1281	1295	Right-handed alpha
Helix 49	AF4	A	1306	1318	Right-handed alpha
Helix 50	AF5	A	1325	1330	Right-handed 310
Helix 51	AF6	A	1343	1347	Right-handed 310
Helix 52	AF7	A	1383	1397	Right-handed alpha
Helix 53	AF8	A	1415	1422	Right-handed alpha
Helix 54	AF9	A	1423	1427	Right-handed 310
Helix 55	AG1	A	1434	1438	Right-handed 310
Helix 56	AG2	A	1440	1451	Right-handed alpha
Helix 57	AG3	A	1459	1469	Right-handed alpha
Helix 58	AG4	A	1494	1501	Right-handed alpha
Helix 59	AG5	A	1512	1516	Right-handed 310
Helix 60	AG6	A	1576	1583	Right-handed alpha
Helix 61	AG7	A	1588	1591	Right-handed 310

There are 20 sheets in PDB entry 6MFY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	31	first strand
Strand 2	A	3	8	parallel
Strand 3	A	45	51	parallel
Strand 4	A	69	73	parallel
Strand 5	A	97	102	anti-parallel
Strand 6	A	112	117	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	164	165	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	230	first strand
Strand 2	A	220	224	anti-parallel
Strand 3	A	411	414	parallel
Strand 4	A	386	389	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	282	first strand
Strand 2	A	255	259	parallel
Strand 3	A	301	306	parallel
Strand 4	A	319	322	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	350	first strand
Strand 2	A	360	364	anti-parallel
Strand 3	A	541	542	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	437	439	first strand
Strand 2	A	458	462	parallel
Strand 3	A	476	481	parallel
Strand 4	A	491	494	anti-parallel
Strand 5	A	506	507	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	516	first strand
Strand 2	A	529	535	anti-parallel
Strand 3	A	562	572	anti-parallel
Strand 4	A	553	555	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	516	first strand
Strand 2	A	529	535	anti-parallel
Strand 3	A	562	572	anti-parallel
Strand 4	A	578	583	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	588	590	first strand
Strand 2	A	593	595	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	612	613	first strand
Strand 2	A	625	632	anti-parallel
Strand 3	A	616	619	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	612	613	first strand
Strand 2	A	625	632	anti-parallel
Strand 3	A	658	662	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	784	785	first strand
Strand 2	A	847	852	anti-parallel
Strand 3	A	839	844	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	859	864	first strand
Strand 2	A	889	895	parallel
Strand 3	A	899	907	anti-parallel
Strand 4	A	807	815	anti-parallel
Strand 5	A	1133	1135	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	988	995	first strand
Strand 2	A	1154	1162	anti-parallel
Strand 3	A	1144	1151	anti-parallel
Strand 4	A	1116	1121	parallel
Strand 5	A	1035	1042	parallel
Strand 6	A	1059	1066	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1240	1241	first strand
Strand 2	A	1429	1431	parallel
Strand 3	A	1404	1406	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1297	1300	first strand
Strand 2	A	1273	1276	parallel
Strand 3	A	1321	1323	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1363	1369	first strand
Strand 2	A	1377	1382	anti-parallel
Strand 3	A	1572	1573	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1455	1458	first strand
Strand 2	A	1481	1484	parallel
Strand 3	A	1505	1510	parallel
Strand 4	A	1520	1524	anti-parallel
Strand 5	A	1537	1538	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1542	1547	first strand
Strand 2	A	1560	1566	anti-parallel
Strand 3	A	1594	1604	anti-parallel
Strand 4	A	1584	1586	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1542	1547	first strand
Strand 2	A	1560	1566	anti-parallel
Strand 3	A	1594	1604	anti-parallel
Strand 4	A	1610	1615	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MFY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MFY