Analysis of interatomic Contacts of Structural Units in PDB entry:
6MFZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MFZ entry

There are 2 chains in PDB entry 6MFZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 1808
B	MET 1	ASP 585

There are 82 helices in PDB entry 6MFZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	24	Right-handed alpha
Helix 2	AA2	A	58	64	Right-handed alpha
Helix 3	AA3	A	84	92	Right-handed alpha
Helix 4	AA4	A	125	144	Right-handed alpha
Helix 5	AA5	A	167	174	Right-handed 310
Helix 6	AA6	A	180	190	Right-handed alpha
Helix 7	AA7	A	204	216	Right-handed alpha
Helix 8	AA8	A	231	249	Right-handed alpha
Helix 9	AA9	A	263	277	Right-handed alpha
Helix 10	AB1	A	288	299	Right-handed alpha
Helix 11	AB2	A	311	315	Right-handed 310
Helix 12	AB3	A	325	329	Right-handed 310
Helix 13	AB4	A	365	380	Right-handed alpha
Helix 14	AB5	A	395	407	Right-handed alpha
Helix 15	AB6	A	416	420	Right-handed 310
Helix 16	AB7	A	422	434	Right-handed alpha
Helix 17	AB8	A	441	449	Right-handed alpha
Helix 18	AB9	A	483	487	Right-handed 310
Helix 19	AC1	A	545	552	Right-handed alpha
Helix 20	AC2	A	596	599	Right-handed 310
Helix 21	AC3	A	600	606	Right-handed alpha
Helix 22	AC4	A	638	647	Right-handed alpha
Helix 23	AC5	A	651	655	Right-handed 310
Helix 24	AC6	A	697	712	Right-handed alpha
Helix 25	AC7	A	722	726	Right-handed 310
Helix 26	AC8	A	728	740	Right-handed alpha
Helix 27	AC9	A	747	754	Right-handed alpha
Helix 28	AD1	A	756	764	Right-handed alpha
Helix 29	AD2	A	787	800	Right-handed alpha
Helix 30	AD3	A	819	834	Right-handed alpha
Helix 31	AD4	A	835	837	Right-handed 310
Helix 32	AD5	A	870	878	Right-handed alpha
Helix 33	AD6	A	913	928	Right-handed alpha
Helix 34	AD7	A	938	950	Right-handed alpha
Helix 35	AD8	A	953	966	Right-handed alpha
Helix 36	AD9	A	996	1010	Right-handed alpha
Helix 37	AE1	A	1013	1030	Right-handed alpha
Helix 38	AE2	A	1047	1051	Right-handed 310
Helix 39	AE3	A	1072	1090	Right-handed alpha
Helix 40	AE4	A	1094	1101	Right-handed alpha
Helix 41	AE5	A	1126	1131	Right-handed alpha
Helix 42	AE6	A	1168	1188	Right-handed alpha
Helix 43	AE7	A	1200	1211	Right-handed alpha
Helix 44	AE8	A	1222	1234	Right-handed alpha
Helix 45	AE9	A	1249	1266	Right-handed alpha
Helix 46	AF1	A	1281	1295	Right-handed alpha
Helix 47	AF2	A	1306	1317	Right-handed alpha
Helix 48	AF3	A	1326	1333	Right-handed 310
Helix 49	AF4	A	1383	1397	Right-handed alpha
Helix 50	AF5	A	1414	1421	Right-handed alpha
Helix 51	AF6	A	1434	1438	Right-handed 310
Helix 52	AF7	A	1440	1452	Right-handed alpha
Helix 53	AF8	A	1462	1469	Right-handed alpha
Helix 54	AF9	A	1493	1501	Right-handed alpha
Helix 55	AG1	A	1576	1583	Right-handed alpha
Helix 56	AG2	A	1631	1633	Right-handed 310
Helix 57	AG3	A	1634	1639	Right-handed alpha
Helix 58	AG4	A	1670	1680	Right-handed alpha
Helix 59	AG5	A	1683	1687	Right-handed 310
Helix 60	AG6	A	1728	1742	Right-handed alpha
Helix 61	AG7	A	1759	1772	Right-handed alpha
Helix 62	AG8	A	1778	1785	Right-handed alpha
Helix 63	AG9	A	1791	1795	Right-handed 310
Helix 64	AH1	B	14	24	Right-handed alpha
Helix 65	AH2	B	58	64	Right-handed alpha
Helix 66	AH3	B	84	92	Right-handed alpha
Helix 67	AH4	B	125	144	Right-handed alpha
Helix 68	AH5	B	167	174	Right-handed 310
Helix 69	AH6	B	180	192	Right-handed alpha
Helix 70	AH7	B	204	216	Right-handed alpha
Helix 71	AH8	B	231	249	Right-handed alpha
Helix 72	AH9	B	263	277	Right-handed alpha
Helix 73	AI1	B	288	299	Right-handed alpha
Helix 74	AI2	B	311	315	Right-handed 310
Helix 75	AI3	B	325	329	Right-handed 310
Helix 76	AI4	B	365	380	Right-handed alpha
Helix 77	AI5	B	395	407	Right-handed alpha
Helix 78	AI6	B	416	420	Right-handed 310
Helix 79	AI7	B	422	434	Right-handed alpha
Helix 80	AI8	B	441	449	Right-handed alpha
Helix 81	AI9	B	483	487	Right-handed 310
Helix 82	AJ1	B	545	552	Right-handed alpha

There are 26 sheets in PDB entry 6MFZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	31	first strand
Strand 2	A	2	8	parallel
Strand 3	A	47	51	parallel
Strand 4	A	69	73	parallel
Strand 5	A	98	102	anti-parallel
Strand 6	A	112	116	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	230	first strand
Strand 2	A	220	224	anti-parallel
Strand 3	A	411	414	parallel
Strand 4	A	386	388	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	282	first strand
Strand 2	A	255	258	parallel
Strand 3	A	303	305	parallel
Strand 4	A	319	320	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	350	first strand
Strand 2	A	360	364	anti-parallel
Strand 3	A	541	542	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	437	439	first strand
Strand 2	A	458	462	parallel
Strand 3	A	476	481	parallel
Strand 4	A	491	495	anti-parallel
Strand 5	A	506	507	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	516	first strand
Strand 2	A	529	535	anti-parallel
Strand 3	A	562	572	anti-parallel
Strand 4	A	553	555	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	516	first strand
Strand 2	A	529	535	anti-parallel
Strand 3	A	562	572	anti-parallel
Strand 4	A	578	583	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	588	589	first strand
Strand 2	A	594	595	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	613	619	first strand
Strand 2	A	625	632	anti-parallel
Strand 3	A	658	662	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	859	863	first strand
Strand 2	A	889	895	parallel
Strand 3	A	900	907	anti-parallel
Strand 4	A	807	814	anti-parallel
Strand 5	A	1133	1135	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	839	844	first strand
Strand 2	A	847	852	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	988	995	first strand
Strand 2	A	1154	1162	anti-parallel
Strand 3	A	1144	1151	anti-parallel
Strand 4	A	1116	1121	parallel
Strand 5	A	1035	1041	parallel
Strand 6	A	1060	1066	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1245	1248	first strand
Strand 2	A	1238	1242	anti-parallel
Strand 3	A	1429	1432	parallel
Strand 4	A	1404	1407	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1297	1300	first strand
Strand 2	A	1273	1277	parallel
Strand 3	A	1322	1324	parallel
Strand 4	A	1339	1340	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1363	1368	first strand
Strand 2	A	1378	1382	anti-parallel
Strand 3	A	1572	1573	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1455	1458	first strand
Strand 2	A	1481	1484	parallel
Strand 3	A	1505	1510	parallel
Strand 4	A	1520	1524	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1543	1547	first strand
Strand 2	A	1560	1565	anti-parallel
Strand 3	A	1595	1603	anti-parallel
Strand 4	A	1584	1585	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1543	1547	first strand
Strand 2	A	1560	1565	anti-parallel
Strand 3	A	1595	1603	anti-parallel
Strand 4	A	1611	1615	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1642	1650	first strand
Strand 2	A	1658	1665	anti-parallel
Strand 3	A	1693	1694	parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	31	first strand
Strand 2	B	2	7	parallel
Strand 3	B	47	51	parallel
Strand 4	B	69	73	parallel
Strand 5	B	98	102	anti-parallel
Strand 6	B	112	116	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	230	first strand
Strand 2	B	220	224	anti-parallel
Strand 3	B	411	414	parallel
Strand 4	B	386	388	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	282	first strand
Strand 2	B	255	258	parallel
Strand 3	B	303	305	parallel
Strand 4	B	319	320	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	350	first strand
Strand 2	B	360	364	anti-parallel
Strand 3	B	541	542	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	439	first strand
Strand 2	B	458	462	parallel
Strand 3	B	476	481	parallel
Strand 4	B	491	495	anti-parallel
Strand 5	B	506	507	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	516	first strand
Strand 2	B	529	535	anti-parallel
Strand 3	B	562	572	anti-parallel
Strand 4	B	553	555	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	516	first strand
Strand 2	B	529	535	anti-parallel
Strand 3	B	562	572	anti-parallel
Strand 4	B	578	583	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MFZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MFZ