Analysis of interatomic Contacts of Structural Units in PDB entry:
6MGD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MGD entry

There are 2 chains in PDB entry 6MGD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2LYS 323
B
 GLU 2LYS 323
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6MGD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 21Right-handed alpha
Helix 2
AA2
A
30 42Right-handed alpha
Helix 3
AA3
A
51 57Right-handed alpha
Helix 4
AA4
A
104 113Right-handed alpha
Helix 5
AA5
A
116 133Right-handed alpha
Helix 6
AA6
A
165 170Right-handed alpha
Helix 7
AA7
A
177 189Right-handed alpha
Helix 8
AA8
A
229 234Right-handed alpha
Helix 9
AA9
A
245 254Right-handed alpha
Helix 10
AB1
A
285 294Right-handed alpha
Helix 11
AB2
A
310 323Right-handed alpha
Helix 12
AB3
B
10 18Right-handed alpha
Helix 13
AB4
B
30 41Right-handed alpha
Helix 14
AB5
B
51 56Right-handed alpha
Helix 15
AB6
B
104 113Right-handed alpha
Helix 16
AB7
B
116 133Right-handed alpha
Helix 17
AB8
B
165 172Right-handed alpha
Helix 18
AB9
B
177 189Right-handed alpha
Helix 19
AC1
B
212 217Right-handed alpha
Helix 20
AC2
B
231 236Right-handed alpha
Helix 21
AC3
B
245 253Right-handed alpha
Helix 22
AC4
B
285 294Right-handed alpha
Helix 23
AC5
B
310 323Right-handed alpha
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There are 4 sheets in PDB entry 6MGD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 28first strand
Strand 2
A
4 7parallel
Strand 3
A
44 49parallel
Strand 4
A
64 71parallel
Strand 5
A
88 92anti-parallel
Strand 6
A
298 300anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 223first strand
Strand 2
A
193 197parallel
Strand 3
A
155 159parallel
Strand 4
A
238 241parallel
Strand 5
A
257 259parallel
Strand 6
A
272 273parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 28first strand
Strand 2
B
4 7parallel
Strand 3
B
44 49parallel
Strand 4
B
64 71parallel
Strand 5
B
88 92anti-parallel
Strand 6
B
298 300anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 223first strand
Strand 2
B
193 197parallel
Strand 3
B
155 159parallel
Strand 4
B
238 241parallel
Strand 5
B
257 259parallel
Strand 6
B
272 273parallel
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