Analysis of interatomic Contacts of Structural Units in PDB entry:
6MGE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MGE entry

There are 3 chains in PDB entry 6MGE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 89PRO 242
B
 GLY 90ILE 244
C
 GLY 90PRO 242
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 6MGE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
222 224Right-handed 310
Helix 2
AA2
B
113 119Right-handed 310
Helix 3
AA3
B
170 174Right-handed 310
Helix 4
AA4
B
222 224Right-handed 310
Helix 5
AA5
C
113 116Right-handed 310
Helix 6
AA6
C
222 224Right-handed 310
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There are 12 sheets in PDB entry 6MGE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 111first strand
Strand 2
A
92 97anti-parallel
Strand 3
A
234 239anti-parallel
Strand 4
A
139 151anti-parallel
Strand 5
A
195 206anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 111first strand
Strand 2
A
92 97anti-parallel
Strand 3
A
234 239anti-parallel
Strand 4
A
139 151anti-parallel
Strand 5
A
226 228anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
211 221anti-parallel
Strand 3
A
132 135anti-parallel
Strand 4
A
124 127anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
211 221anti-parallel
Strand 3
A
158 168anti-parallel
Strand 4
A
179 185anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 111first strand
Strand 2
B
92 97anti-parallel
Strand 3
B
234 241anti-parallel
Strand 4
B
139 151anti-parallel
Strand 5
B
195 206anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 111first strand
Strand 2
B
92 97anti-parallel
Strand 3
B
234 241anti-parallel
Strand 4
B
139 151anti-parallel
Strand 5
B
226 228anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 106first strand
Strand 2
B
211 220anti-parallel
Strand 3
B
132 134anti-parallel
Strand 4
B
125 127anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 106first strand
Strand 2
B
211 220anti-parallel
Strand 3
B
159 168anti-parallel
Strand 4
B
179 185anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
109 111first strand
Strand 2
C
92 97anti-parallel
Strand 3
C
234 241anti-parallel
Strand 4
C
139 151anti-parallel
Strand 5
C
195 206anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
109 111first strand
Strand 2
C
92 97anti-parallel
Strand 3
C
234 241anti-parallel
Strand 4
C
139 151anti-parallel
Strand 5
C
226 228anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
105 106first strand
Strand 2
C
211 221anti-parallel
Strand 3
C
132 134anti-parallel
Strand 4
C
125 127anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
105 106first strand
Strand 2
C
211 221anti-parallel
Strand 3
C
158 168anti-parallel
Strand 4
C
179 185anti-parallel
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