Analysis of interatomic Contacts of Structural Units in PDB entry:
6MGG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MGG entry

There are 6 chains in PDB entry 6MGG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	GLY 246
A	ALA 248	TYR 294
B	MET 1	GLY 387
C	SER 2	GLY 246
C	ALA 248	GLN 296
D	MET 1	LEU 350

There are 59 helices in PDB entry 6MGG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	32	Right-handed alpha
Helix 2	AA2	A	56	65	Right-handed alpha
Helix 3	AA3	A	74	76	Right-handed 310
Helix 4	AA4	A	77	87	Right-handed alpha
Helix 5	AA5	A	101	112	Right-handed alpha
Helix 6	AA6	A	113	115	Right-handed 310
Helix 7	AA7	A	139	143	Right-handed 310
Helix 8	AA8	A	155	168	Right-handed alpha
Helix 9	AA9	A	187	197	Right-handed alpha
Helix 10	AB1	A	213	226	Right-handed alpha
Helix 11	AB2	A	258	269	Right-handed alpha
Helix 12	AB3	A	276	278	Right-handed 310
Helix 13	AB4	A	279	289	Right-handed alpha
Helix 14	AB5	B	4	15	Right-handed alpha
Helix 15	AB6	B	27	39	Right-handed alpha
Helix 16	AB7	B	65	77	Right-handed alpha
Helix 17	AB8	B	133	141	Right-handed alpha
Helix 18	AB9	B	142	145	Right-handed 310
Helix 19	AC1	B	157	168	Right-handed alpha
Helix 20	AC2	B	172	192	Right-handed alpha
Helix 21	AC3	B	221	226	Right-handed 310
Helix 22	AC4	B	227	232	Right-handed alpha
Helix 23	AC5	B	233	234	Right-handed 310
Helix 24	AC6	B	235	239	Right-handed 310
Helix 25	AC7	B	240	248	Right-handed alpha
Helix 26	AC8	B	266	280	Right-handed alpha
Helix 27	AC9	B	295	308	Right-handed alpha
Helix 28	AD1	B	325	338	Right-handed alpha
Helix 29	AD2	B	354	364	Right-handed alpha
Helix 30	AD3	B	374	385	Right-handed alpha
Helix 31	AD4	C	18	32	Right-handed alpha
Helix 32	AD5	C	56	65	Right-handed alpha
Helix 33	AD6	C	74	76	Right-handed 310
Helix 34	AD7	C	77	88	Right-handed alpha
Helix 35	AD8	C	101	112	Right-handed alpha
Helix 36	AD9	C	113	115	Right-handed 310
Helix 37	AE1	C	139	143	Right-handed 310
Helix 38	AE2	C	155	168	Right-handed alpha
Helix 39	AE3	C	187	197	Right-handed alpha
Helix 40	AE4	C	213	226	Right-handed alpha
Helix 41	AE5	C	258	269	Right-handed alpha
Helix 42	AE6	C	276	278	Right-handed 310
Helix 43	AE7	C	279	289	Right-handed alpha
Helix 44	AE8	D	4	15	Right-handed alpha
Helix 45	AE9	D	27	39	Right-handed alpha
Helix 46	AF1	D	65	77	Right-handed alpha
Helix 47	AF2	D	133	141	Right-handed alpha
Helix 48	AF3	D	142	145	Right-handed 310
Helix 49	AF4	D	157	168	Right-handed alpha
Helix 50	AF5	D	172	192	Right-handed alpha
Helix 51	AF6	D	221	226	Right-handed 310
Helix 52	AF7	D	227	232	Right-handed alpha
Helix 53	AF8	D	233	234	Right-handed 310
Helix 54	AF9	D	235	239	Right-handed 310
Helix 55	AG1	D	240	248	Right-handed alpha
Helix 56	AG2	D	266	280	Right-handed alpha
Helix 57	AG3	D	295	308	Right-handed alpha
Helix 58	AG4	D	327	341	Right-handed alpha
Helix 59	AG5	D	374	385	Right-handed alpha

There are 15 sheets in PDB entry 6MGG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	A	51	54	anti-parallel
Strand 3	A	34	39	parallel
Strand 4	A	10	14	parallel
Strand 5	A	68	71	parallel
Strand 6	A	92	95	parallel
Strand 7	A	118	120	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	136	first strand
Strand 2	A	126	129	anti-parallel
Strand 3	A	172	177	anti-parallel
Strand 4	A	148	152	parallel
Strand 5	A	203	209	parallel
Strand 6	A	230	235	parallel
Strand 7	A	272	273	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	19	first strand
Strand 2	B	210	212	parallel
Strand 3	B	194	205	anti-parallel
Strand 4	B	105	116	anti-parallel
Strand 5	B	121	127	anti-parallel
Strand 6	B	146	149	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	19	first strand
Strand 2	B	210	212	parallel
Strand 3	B	194	205	anti-parallel
Strand 4	B	215	219	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	25	first strand
Strand 2	B	96	100	anti-parallel
Strand 3	B	43	47	anti-parallel
Strand 4	B	60	63	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	81	first strand
Strand 2	B	91	92	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	255	first strand
Strand 2	B	286	289	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	260	264	first strand
Strand 2	B	314	321	parallel
Strand 3	B	346	352	parallel
Strand 4	B	370	372	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	48	first strand
Strand 2	C	51	54	anti-parallel
Strand 3	C	34	39	parallel
Strand 4	C	10	14	parallel
Strand 5	C	68	71	parallel
Strand 6	C	92	95	parallel
Strand 7	C	118	120	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	136	first strand
Strand 2	C	126	129	anti-parallel
Strand 3	C	172	177	anti-parallel
Strand 4	C	148	152	parallel
Strand 5	C	203	209	parallel
Strand 6	C	230	235	parallel
Strand 7	C	272	273	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	25	first strand
Strand 2	D	96	100	anti-parallel
Strand 3	D	43	47	anti-parallel
Strand 4	D	60	63	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	149	first strand
Strand 2	D	121	127	anti-parallel
Strand 3	D	105	116	anti-parallel
Strand 4	D	194	205	anti-parallel
Strand 5	D	210	212	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	149	first strand
Strand 2	D	121	127	anti-parallel
Strand 3	D	105	116	anti-parallel
Strand 4	D	194	205	anti-parallel
Strand 5	D	215	219	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	252	255	first strand
Strand 2	D	286	289	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	260	264	first strand
Strand 2	D	314	320	parallel
Strand 3	D	346	351	parallel
Strand 4	D	370	372	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MGG

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MGG