Analysis of interatomic Contacts of Structural Units in PDB entry:
6MGK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MGK entry

There are 2 chains in PDB entry 6MGK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -1	VAL 745
B	GLY -1	LYS 567

There are 21 helices in PDB entry 6MGK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	61	65	Right-handed 310
Helix 2	AA2	A	193	196	Right-handed 310
Helix 3	AA3	A	284	288	Right-handed 310
Helix 4	AA4	A	352	357	Right-handed 310
Helix 5	AA5	A	400	407	Right-handed 310
Helix 6	AA6	B	61	65	Right-handed 310
Helix 7	AA7	B	193	196	Right-handed 310
Helix 8	AA8	B	284	288	Right-handed 310
Helix 9	AA9	B	352	357	Right-handed 310
Helix 10	AB1	B	400	405	Right-handed 310
Helix 11	AB2	B	613	617	Right-handed 310
Helix 12	AB3	C	61	65	Right-handed 310
Helix 13	AB4	C	193	196	Right-handed 310
Helix 14	AB5	C	284	288	Right-handed 310
Helix 15	AB6	C	352	357	Right-handed 310
Helix 16	AB7	C	400	407	Right-handed 310
Helix 17	AB8	D	61	65	Right-handed 310
Helix 18	AB9	D	193	196	Right-handed 310
Helix 19	AC1	D	284	288	Right-handed 310
Helix 20	AC2	D	352	357	Right-handed 310
Helix 21	AC3	D	400	407	Right-handed 310

There are 60 sheets in PDB entry 6MGK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	0	1	first strand
Strand 2	A	704	705	parallel
Strand 3	A	690	696	anti-parallel
Strand 4	A	680	687	anti-parallel
Strand 5	A	663	670	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	8	first strand
Strand 2	A	739	744	anti-parallel
Strand 3	A	726	733	anti-parallel
Strand 4	A	720	723	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	23	first strand
Strand 2	A	31	34	anti-parallel
Strand 3	A	40	44	anti-parallel
Strand 4	A	49	52	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	72	first strand
Strand 2	A	80	84	anti-parallel
Strand 3	A	96	100	anti-parallel
Strand 4	A	108	111	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	131	first strand
Strand 2	A	139	142	anti-parallel
Strand 3	A	149	152	anti-parallel
Strand 4	A	160	161	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	191	first strand
Strand 2	A	205	209	anti-parallel
Strand 3	A	216	219	anti-parallel
Strand 4	A	227	228	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	243	first strand
Strand 2	A	248	254	anti-parallel
Strand 3	A	265	271	anti-parallel
Strand 4	A	277	279	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	297	first strand
Strand 2	A	305	310	anti-parallel
Strand 3	A	319	322	anti-parallel
Strand 4	A	330	331	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	335	first strand
Strand 2	A	341	343	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	348	first strand
Strand 2	A	410	414	parallel
Strand 3	A	395	398	anti-parallel
Strand 4	A	383	390	anti-parallel
Strand 5	A	377	380	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	428	first strand
Strand 2	A	437	441	anti-parallel
Strand 3	A	448	449	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	468	474	first strand
Strand 2	A	477	485	anti-parallel
Strand 3	A	498	501	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	527	530	first strand
Strand 2	A	537	540	anti-parallel
Strand 3	A	546	549	anti-parallel
Strand 4	A	557	558	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	567	570	first strand
Strand 2	A	578	582	anti-parallel
Strand 3	A	585	589	anti-parallel
Strand 4	A	597	598	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	619	623	first strand
Strand 2	A	631	637	anti-parallel
Strand 3	A	642	648	anti-parallel
Strand 4	A	656	657	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	8	first strand
Strand 2	B	739	744	anti-parallel
Strand 3	B	726	733	anti-parallel
Strand 4	B	720	723	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	23	first strand
Strand 2	B	31	34	anti-parallel
Strand 3	B	40	44	anti-parallel
Strand 4	B	49	52	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	72	first strand
Strand 2	B	80	84	anti-parallel
Strand 3	B	96	100	anti-parallel
Strand 4	B	108	111	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	131	first strand
Strand 2	B	139	142	anti-parallel
Strand 3	B	149	152	anti-parallel
Strand 4	B	160	161	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	191	first strand
Strand 2	B	205	209	anti-parallel
Strand 3	B	216	219	anti-parallel
Strand 4	B	227	228	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	243	first strand
Strand 2	B	248	254	anti-parallel
Strand 3	B	265	271	anti-parallel
Strand 4	B	277	279	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	297	first strand
Strand 2	B	305	310	anti-parallel
Strand 3	B	319	322	anti-parallel
Strand 4	B	330	331	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	335	first strand
Strand 2	B	341	343	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	348	first strand
Strand 2	B	410	414	parallel
Strand 3	B	395	398	anti-parallel
Strand 4	B	387	390	anti-parallel
Strand 5	B	377	379	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	424	428	first strand
Strand 2	B	437	441	anti-parallel
Strand 3	B	448	449	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	468	473	first strand
Strand 2	B	481	485	anti-parallel
Strand 3	B	498	501	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	527	530	first strand
Strand 2	B	537	540	anti-parallel
Strand 3	B	546	549	anti-parallel
Strand 4	B	557	558	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	567	570	first strand
Strand 2	B	578	582	anti-parallel
Strand 3	B	585	589	anti-parallel
Strand 4	B	597	598	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	619	623	first strand
Strand 2	B	631	637	anti-parallel
Strand 3	B	642	648	anti-parallel
Strand 4	B	656	657	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	663	670	first strand
Strand 2	B	680	687	anti-parallel
Strand 3	B	690	696	anti-parallel
Strand 4	B	704	705	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	0	1	first strand
Strand 2	C	704	705	parallel
Strand 3	C	690	696	anti-parallel
Strand 4	C	680	687	anti-parallel
Strand 5	C	663	670	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	8	first strand
Strand 2	C	739	744	anti-parallel
Strand 3	C	726	733	anti-parallel
Strand 4	C	720	723	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	23	first strand
Strand 2	C	31	34	anti-parallel
Strand 3	C	40	44	anti-parallel
Strand 4	C	49	52	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	72	first strand
Strand 2	C	80	84	anti-parallel
Strand 3	C	96	100	anti-parallel
Strand 4	C	108	111	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	131	first strand
Strand 2	C	139	142	anti-parallel
Strand 3	C	149	152	anti-parallel
Strand 4	C	160	161	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	191	first strand
Strand 2	C	205	209	anti-parallel
Strand 3	C	216	219	anti-parallel
Strand 4	C	227	228	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	243	first strand
Strand 2	C	248	254	anti-parallel
Strand 3	C	265	271	anti-parallel
Strand 4	C	277	279	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	297	first strand
Strand 2	C	305	310	anti-parallel
Strand 3	C	319	322	anti-parallel
Strand 4	C	330	331	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	335	first strand
Strand 2	C	341	343	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	348	first strand
Strand 2	C	410	414	parallel
Strand 3	C	395	398	anti-parallel
Strand 4	C	387	390	anti-parallel
Strand 5	C	376	379	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	424	428	first strand
Strand 2	C	437	441	anti-parallel
Strand 3	C	448	449	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	470	474	first strand
Strand 2	C	477	484	anti-parallel
Strand 3	C	498	501	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	527	530	first strand
Strand 2	C	537	540	anti-parallel
Strand 3	C	546	549	anti-parallel
Strand 4	C	557	558	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	567	570	first strand
Strand 2	C	578	582	anti-parallel
Strand 3	C	585	589	anti-parallel
Strand 4	C	597	598	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	618	623	first strand
Strand 2	C	631	637	anti-parallel
Strand 3	C	642	648	anti-parallel
Strand 4	C	656	657	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	8	first strand
Strand 2	D	739	744	anti-parallel
Strand 3	D	726	733	anti-parallel
Strand 4	D	720	723	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	23	first strand
Strand 2	D	31	34	anti-parallel
Strand 3	D	40	44	anti-parallel
Strand 4	D	49	52	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	72	first strand
Strand 2	D	80	84	anti-parallel
Strand 3	D	96	100	anti-parallel
Strand 4	D	108	111	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	131	first strand
Strand 2	D	139	142	anti-parallel
Strand 3	D	149	152	anti-parallel
Strand 4	D	160	161	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	186	191	first strand
Strand 2	D	205	209	anti-parallel
Strand 3	D	216	219	anti-parallel
Strand 4	D	227	228	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	243	first strand
Strand 2	D	248	254	anti-parallel
Strand 3	D	265	271	anti-parallel
Strand 4	D	277	279	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	297	first strand
Strand 2	D	305	310	anti-parallel
Strand 3	D	319	322	anti-parallel
Strand 4	D	330	331	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	335	first strand
Strand 2	D	341	343	anti-parallel

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There are 5 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	345	348	first strand
Strand 2	D	410	414	parallel
Strand 3	D	395	398	anti-parallel
Strand 4	D	387	390	anti-parallel
Strand 5	D	377	379	anti-parallel

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There are 3 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	424	428	first strand
Strand 2	D	437	441	anti-parallel
Strand 3	D	448	449	anti-parallel

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There are 3 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	468	473	first strand
Strand 2	D	481	485	anti-parallel
Strand 3	D	498	501	anti-parallel

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There are 4 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	527	530	first strand
Strand 2	D	537	540	anti-parallel
Strand 3	D	546	549	anti-parallel
Strand 4	D	557	558	anti-parallel

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There are 4 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	567	570	first strand
Strand 2	D	578	582	anti-parallel
Strand 3	D	585	589	anti-parallel
Strand 4	D	597	598	anti-parallel

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There are 4 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	619	623	first strand
Strand 2	D	631	637	anti-parallel
Strand 3	D	642	648	anti-parallel
Strand 4	D	656	657	anti-parallel

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There are 4 strands in AG6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	663	670	first strand
Strand 2	D	680	687	anti-parallel
Strand 3	D	690	696	anti-parallel
Strand 4	D	704	705	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MGK

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MGK