Analysis of interatomic Contacts of Structural Units in PDB entry:
6MGQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MGQ entry

There are 2 chains in PDB entry 6MGQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 43	GLU 936
B	ASP 43	ASP 434

There are103 helices in PDB entry 6MGQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	111	115	Right-handed 310
Helix 2	AA2	A	186	191	Right-handed alpha
Helix 3	AA3	A	243	247	Right-handed 310
Helix 4	AA4	A	274	278	Right-handed 310
Helix 5	AA5	A	279	297	Right-handed alpha
Helix 6	AA6	A	329	333	Right-handed alpha
Helix 7	AA7	A	342	360	Right-handed alpha
Helix 8	AA8	A	368	370	Right-handed 310
Helix 9	AA9	A	371	391	Right-handed alpha
Helix 10	AB1	A	392	394	Right-handed 310
Helix 11	AB2	A	395	412	Right-handed alpha
Helix 12	AB3	A	425	430	Right-handed alpha
Helix 13	AB4	A	434	452	Right-handed alpha
Helix 14	AB5	A	453	468	Right-handed alpha
Helix 15	AB6	A	474	484	Right-handed alpha
Helix 16	AB7	A	516	526	Right-handed alpha
Helix 17	AB8	A	602	605	Right-handed 310
Helix 18	AB9	A	615	627	Right-handed alpha
Helix 19	AC1	A	632	649	Right-handed alpha
Helix 20	AC2	A	653	662	Right-handed alpha
Helix 21	AC3	A	663	666	Right-handed 310
Helix 22	AC4	A	669	689	Right-handed alpha
Helix 23	AC5	A	695	714	Right-handed alpha
Helix 24	AC6	A	721	738	Right-handed alpha
Helix 25	AC7	A	740	757	Right-handed alpha
Helix 26	AC8	A	767	776	Right-handed alpha
Helix 27	AC9	A	778	792	Right-handed alpha
Helix 28	AD1	A	794	806	Right-handed alpha
Helix 29	AD2	A	810	823	Right-handed alpha
Helix 30	AD3	A	832	841	Right-handed alpha
Helix 31	AD4	A	845	856	Right-handed alpha
Helix 32	AD5	A	856	865	Right-handed alpha
Helix 33	AD6	A	869	878	Right-handed alpha
Helix 34	AD7	A	884	896	Right-handed alpha
Helix 35	AD8	A	904	936	Right-handed alpha
Helix 36	AD9	B	111	115	Right-handed 310
Helix 37	AE1	B	186	190	Right-handed 310
Helix 38	AE2	B	243	247	Right-handed 310
Helix 39	AE3	B	272	278	Right-handed 310
Helix 40	AE4	B	279	298	Right-handed alpha
Helix 41	AE5	B	329	333	Right-handed alpha
Helix 42	AE6	B	342	360	Right-handed alpha
Helix 43	AE7	B	368	370	Right-handed 310
Helix 44	AE8	B	371	391	Right-handed alpha
Helix 45	AE9	B	392	394	Right-handed 310
Helix 46	AF1	B	395	412	Right-handed alpha
Helix 47	AF2	B	425	433	Right-handed alpha
Helix 48	AF3	B	434	452	Right-handed alpha
Helix 49	AF4	B	453	468	Right-handed alpha
Helix 50	AF5	B	474	484	Right-handed alpha
Helix 51	AF6	B	516	526	Right-handed alpha
Helix 52	AF7	B	602	605	Right-handed 310
Helix 53	AF8	B	615	627	Right-handed alpha
Helix 54	AF9	B	632	649	Right-handed alpha
Helix 55	AG1	B	653	662	Right-handed alpha
Helix 56	AG2	B	663	667	Right-handed 310
Helix 57	AG3	B	669	688	Right-handed alpha
Helix 58	AG4	B	693	714	Right-handed alpha
Helix 59	AG5	B	721	738	Right-handed alpha
Helix 60	AG6	B	740	757	Right-handed alpha
Helix 61	AG7	B	758	761	Right-handed 310
Helix 62	AG8	B	764	776	Right-handed alpha
Helix 63	AG9	B	780	790	Right-handed alpha
Helix 64	AH1	B	795	807	Right-handed alpha
Helix 65	AH2	B	810	825	Right-handed alpha
Helix 66	AH3	B	836	842	Right-handed alpha
Helix 67	AH4	B	845	860	Right-handed alpha
Helix 68	AH5	B	867	880	Right-handed alpha
Helix 69	AH6	B	884	903	Right-handed alpha
Helix 70	AH7	B	907	936	Right-handed alpha
Helix 71	AH8	C	111	115	Right-handed 310
Helix 72	AH9	C	185	190	Right-handed 310
Helix 73	AI1	C	243	247	Right-handed 310
Helix 74	AI2	C	275	278	Right-handed 310
Helix 75	AI3	C	279	298	Right-handed alpha
Helix 76	AI4	C	330	332	Right-handed 310
Helix 77	AI5	C	342	360	Right-handed alpha
Helix 78	AI6	C	368	370	Right-handed 310
Helix 79	AI7	C	371	391	Right-handed alpha
Helix 80	AI8	C	395	413	Right-handed alpha
Helix 81	AI9	C	425	433	Right-handed alpha
Helix 82	AJ1	C	434	452	Right-handed alpha
Helix 83	AJ2	C	453	468	Right-handed alpha
Helix 84	AJ3	C	474	484	Right-handed alpha
Helix 85	AJ4	C	516	526	Right-handed alpha
Helix 86	AJ5	C	602	605	Right-handed 310
Helix 87	AJ6	C	615	627	Right-handed alpha
Helix 88	AJ7	C	632	647	Right-handed alpha
Helix 89	AJ8	C	653	662	Right-handed alpha
Helix 90	AJ9	C	663	667	Right-handed 310
Helix 91	AK1	C	669	689	Right-handed alpha
Helix 92	AK2	C	693	713	Right-handed alpha
Helix 93	AK3	C	721	738	Right-handed alpha
Helix 94	AK4	C	740	758	Right-handed alpha
Helix 95	AK5	C	764	776	Right-handed alpha
Helix 96	AK6	C	778	792	Right-handed alpha
Helix 97	AK7	C	796	807	Right-handed alpha
Helix 98	AK8	C	810	820	Right-handed alpha
Helix 99	AK9	C	828	841	Right-handed alpha
Helix 100	AL1	C	845	856	Right-handed alpha
Helix 101	AL2	C	856	865	Right-handed alpha
Helix 102	AL3	C	884	891	Right-handed alpha
Helix 103	AL4	C	911	936	Right-handed alpha

There are 26 sheets in PDB entry 6MGQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	119	first strand
Strand 2	A	101	109	anti-parallel
Strand 3	A	144	154	anti-parallel
Strand 4	A	75	86	anti-parallel
Strand 5	A	58	70	anti-parallel
Strand 6	A	202	209	parallel
Strand 7	A	232	238	anti-parallel
Strand 8	A	221	225	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	96	first strand
Strand 2	A	130	134	anti-parallel
Strand 3	A	121	125	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	168	first strand
Strand 2	A	174	181	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	217	first strand
Strand 2	A	249	252	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	260	first strand
Strand 2	A	266	271	anti-parallel
Strand 3	A	305	311	parallel
Strand 4	A	324	328	parallel
Strand 5	A	318	319	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	366	first strand
Strand 2	A	471	473	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	586	590	first strand
Strand 2	A	541	548	anti-parallel
Strand 3	A	531	538	anti-parallel
Strand 4	A	609	612	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	578	582	first strand
Strand 2	A	565	571	anti-parallel
Strand 3	A	598	600	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	119	first strand
Strand 2	B	101	108	anti-parallel
Strand 3	B	144	154	anti-parallel
Strand 4	B	75	86	anti-parallel
Strand 5	B	58	70	anti-parallel
Strand 6	B	202	203	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	119	first strand
Strand 2	B	101	108	anti-parallel
Strand 3	B	144	154	anti-parallel
Strand 4	B	75	86	anti-parallel
Strand 5	B	58	70	anti-parallel
Strand 6	B	206	209	parallel
Strand 7	B	231	236	anti-parallel
Strand 8	B	221	228	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	96	first strand
Strand 2	B	130	134	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	168	first strand
Strand 2	B	174	181	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	217	first strand
Strand 2	B	249	252	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	260	first strand
Strand 2	B	266	271	anti-parallel
Strand 3	B	305	311	parallel
Strand 4	B	324	328	parallel
Strand 5	B	318	319	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	366	first strand
Strand 2	B	471	473	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	586	590	first strand
Strand 2	B	541	548	anti-parallel
Strand 3	B	531	538	anti-parallel
Strand 4	B	609	612	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	578	582	first strand
Strand 2	B	565	571	anti-parallel
Strand 3	B	598	600	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	119	first strand
Strand 2	C	101	109	anti-parallel
Strand 3	C	145	154	anti-parallel
Strand 4	C	75	86	anti-parallel
Strand 5	C	58	63	anti-parallel
Strand 6	C	202	203	parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	119	first strand
Strand 2	C	101	109	anti-parallel
Strand 3	C	145	154	anti-parallel
Strand 4	C	75	86	anti-parallel
Strand 5	C	66	70	anti-parallel
Strand 6	C	206	209	parallel
Strand 7	C	232	236	anti-parallel
Strand 8	C	221	226	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	96	first strand
Strand 2	C	130	134	anti-parallel
Strand 3	C	121	125	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	168	first strand
Strand 2	C	174	181	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	214	217	first strand
Strand 2	C	249	252	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	260	first strand
Strand 2	C	266	271	anti-parallel
Strand 3	C	305	311	parallel
Strand 4	C	324	328	parallel
Strand 5	C	318	319	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	364	366	first strand
Strand 2	C	471	473	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	586	590	first strand
Strand 2	C	541	548	anti-parallel
Strand 3	C	531	538	anti-parallel
Strand 4	C	609	612	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	578	582	first strand
Strand 2	C	565	571	anti-parallel
Strand 3	C	598	600	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MGQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MGQ