Analysis of interatomic Contacts of Structural Units in PDB entry:
6MGR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MGR entry

There are 4 chains in PDB entry 6MGR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 482
B	ALA 0	LYS 481
C	ALA 0	LYS 481
D	ALA 0	LYS 345

There are 66 helices in PDB entry 6MGR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	11	Right-handed 310
Helix 2	AA2	A	23	27	Right-handed 310
Helix 3	AA3	A	53	63	Right-handed alpha
Helix 4	AA4	A	74	87	Right-handed alpha
Helix 5	AA5	A	200	205	Right-handed alpha
Helix 6	AA6	A	226	236	Right-handed alpha
Helix 7	AA7	A	250	264	Right-handed alpha
Helix 8	AA8	A	276	286	Right-handed alpha
Helix 9	AA9	A	302	308	Right-handed alpha
Helix 10	AB1	A	312	326	Right-handed alpha
Helix 11	AB2	A	339	349	Right-handed alpha
Helix 12	AB3	A	357	362	Right-handed alpha
Helix 13	AB4	A	386	391	Right-handed alpha
Helix 14	AB5	A	422	442	Right-handed alpha
Helix 15	AB6	A	445	453	Right-handed alpha
Helix 16	AB7	A	459	467	Right-handed alpha
Helix 17	AB8	B	9	11	Right-handed 310
Helix 18	AB9	B	23	27	Right-handed 310
Helix 19	AC1	B	53	63	Right-handed alpha
Helix 20	AC2	B	74	87	Right-handed alpha
Helix 21	AC3	B	226	236	Right-handed alpha
Helix 22	AC4	B	250	264	Right-handed alpha
Helix 23	AC5	B	276	286	Right-handed alpha
Helix 24	AC6	B	302	308	Right-handed alpha
Helix 25	AC7	B	312	325	Right-handed alpha
Helix 26	AC8	B	326	328	Right-handed 310
Helix 27	AC9	B	339	349	Right-handed alpha
Helix 28	AD1	B	357	362	Right-handed alpha
Helix 29	AD2	B	386	391	Right-handed alpha
Helix 30	AD3	B	422	442	Right-handed alpha
Helix 31	AD4	B	445	453	Right-handed alpha
Helix 32	AD5	B	459	467	Right-handed alpha
Helix 33	AD6	C	9	11	Right-handed 310
Helix 34	AD7	C	23	27	Right-handed 310
Helix 35	AD8	C	53	63	Right-handed alpha
Helix 36	AD9	C	74	87	Right-handed alpha
Helix 37	AE1	C	201	205	Right-handed alpha
Helix 38	AE2	C	226	236	Right-handed alpha
Helix 39	AE3	C	250	264	Right-handed alpha
Helix 40	AE4	C	276	286	Right-handed alpha
Helix 41	AE5	C	302	308	Right-handed alpha
Helix 42	AE6	C	312	325	Right-handed alpha
Helix 43	AE7	C	326	328	Right-handed 310
Helix 44	AE8	C	339	349	Right-handed alpha
Helix 45	AE9	C	357	362	Right-handed alpha
Helix 46	AF1	C	386	392	Right-handed alpha
Helix 47	AF2	C	422	442	Right-handed alpha
Helix 48	AF3	C	445	453	Right-handed alpha
Helix 49	AF4	C	459	467	Right-handed alpha
Helix 50	AF5	D	9	11	Right-handed 310
Helix 51	AF6	D	23	27	Right-handed 310
Helix 52	AF7	D	53	63	Right-handed alpha
Helix 53	AF8	D	74	87	Right-handed alpha
Helix 54	AF9	D	201	205	Right-handed alpha
Helix 55	AG1	D	226	236	Right-handed alpha
Helix 56	AG2	D	250	264	Right-handed alpha
Helix 57	AG3	D	276	287	Right-handed alpha
Helix 58	AG4	D	302	308	Right-handed alpha
Helix 59	AG5	D	312	325	Right-handed alpha
Helix 60	AG6	D	326	328	Right-handed 310
Helix 61	AG7	D	339	350	Right-handed alpha
Helix 62	AG8	D	357	362	Right-handed alpha
Helix 63	AG9	D	386	391	Right-handed alpha
Helix 64	AH1	D	422	442	Right-handed alpha
Helix 65	AH2	D	445	453	Right-handed alpha
Helix 66	AH3	D	459	467	Right-handed alpha

There are 16 sheets in PDB entry 6MGR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	B	455	457	parallel
Strand 3	B	13	15	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	15	first strand
Strand 2	A	455	457	anti-parallel
Strand 3	D	3	6	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	32	first strand
Strand 2	A	38	39	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	A	66	69	parallel
Strand 3	A	219	222	parallel
Strand 4	A	240	244	parallel
Strand 5	A	268	274	parallel
Strand 6	A	290	293	parallel
Strand 7	A	331	334	parallel
Strand 8	A	353	356	parallel
Strand 9	A	43	45	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	373	first strand
Strand 2	A	376	382	anti-parallel
Strand 3	A	414	418	anti-parallel
Strand 4	B	472	473	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	475	first strand
Strand 2	D	414	418	anti-parallel
Strand 3	D	376	382	anti-parallel
Strand 4	D	371	373	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	C	455	457	parallel
Strand 3	C	13	15	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	32	first strand
Strand 2	B	38	39	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	45	first strand
Strand 2	B	66	69	parallel
Strand 3	B	219	222	parallel
Strand 4	B	240	244	parallel
Strand 5	B	268	274	parallel
Strand 6	B	290	293	parallel
Strand 7	B	331	334	parallel
Strand 8	B	353	356	parallel
Strand 9	B	43	45	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	373	first strand
Strand 2	B	376	382	anti-parallel
Strand 3	B	414	418	anti-parallel
Strand 4	C	472	475	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	D	455	457	parallel
Strand 3	D	13	15	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	32	first strand
Strand 2	C	38	39	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	45	first strand
Strand 2	C	66	69	parallel
Strand 3	C	219	222	parallel
Strand 4	C	240	244	parallel
Strand 5	C	268	274	parallel
Strand 6	C	290	293	parallel
Strand 7	C	331	334	parallel
Strand 8	C	353	356	parallel
Strand 9	C	43	45	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	371	372	first strand
Strand 2	C	377	382	anti-parallel
Strand 3	C	414	418	anti-parallel
Strand 4	D	472	475	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	32	first strand
Strand 2	D	38	39	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	45	first strand
Strand 2	D	66	69	parallel
Strand 3	D	219	222	parallel
Strand 4	D	240	244	parallel
Strand 5	D	268	274	parallel
Strand 6	D	290	293	parallel
Strand 7	D	331	334	parallel
Strand 8	D	353	356	parallel
Strand 9	D	43	45	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MGR

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MGR