Analysis of interatomic Contacts of Structural Units in PDB entry:
6MHK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MHK entry

There are 2 chains in PDB entry 6MHK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1ILE 588
B
 GLY 1ILE 588
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 47 helices in PDB entry 6MHK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 28Right-handed alpha
Helix 2
AA2
A
41 46Right-handed 310
Helix 3
AA3
A
71 75Right-handed 310
Helix 4
AA4
A
77 84Right-handed alpha
Helix 5
AA5
A
85 103Right-handed alpha
Helix 6
AA6
A
105 110Right-handed alpha
Helix 7
AA7
A
128 138Right-handed alpha
Helix 8
AA8
A
150 162Right-handed alpha
Helix 9
AA9
A
172 174Right-handed 310
Helix 10
AB1
A
175 190Right-handed alpha
Helix 11
AB2
A
207 216Right-handed alpha
Helix 12
AB3
A
249 255Right-handed alpha
Helix 13
AB4
A
281 297Right-handed alpha
Helix 14
AB5
A
299 303Right-handed 310
Helix 15
AB6
A
315 332Right-handed alpha
Helix 16
AB7
A
343 348Right-handed alpha
Helix 17
AB8
A
350 352Right-handed 310
Helix 18
AB9
A
353 369Right-handed alpha
Helix 19
AC1
A
385 389Right-handed 310
Helix 20
AC2
A
461 476Right-handed alpha
Helix 21
AC3
A
481 492Right-handed alpha
Helix 22
AC4
A
506 519Right-handed alpha
Helix 23
AC5
A
547 557Right-handed alpha
Helix 24
AC6
A
561 566Right-handed 310
Helix 25
AC7
B
17 28Right-handed alpha
Helix 26
AC8
B
41 46Right-handed 310
Helix 27
AC9
B
71 75Right-handed 310
Helix 28
AD1
B
77 84Right-handed alpha
Helix 29
AD2
B
85 103Right-handed alpha
Helix 30
AD3
B
128 138Right-handed alpha
Helix 31
AD4
B
150 162Right-handed alpha
Helix 32
AD5
B
172 174Right-handed 310
Helix 33
AD6
B
175 190Right-handed alpha
Helix 34
AD7
B
207 216Right-handed alpha
Helix 35
AD8
B
249 255Right-handed alpha
Helix 36
AD9
B
281 297Right-handed alpha
Helix 37
AE1
B
299 303Right-handed 310
Helix 38
AE2
B
315 330Right-handed alpha
Helix 39
AE3
B
343 348Right-handed alpha
Helix 40
AE4
B
350 352Right-handed 310
Helix 41
AE5
B
353 369Right-handed alpha
Helix 42
AE6
B
385 389Right-handed 310
Helix 43
AE7
B
461 476Right-handed alpha
Helix 44
AE8
B
481 492Right-handed alpha
Helix 45
AE9
B
506 519Right-handed alpha
Helix 46
AF1
B
546 557Right-handed alpha
Helix 47
AF2
B
561 566Right-handed 310
Back to top of page

There are 9 sheets in PDB entry 6MHK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 22 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 393first strand
Strand 2
A
338 341parallel
Strand 3
A
305 307parallel
Strand 4
A
417 423parallel
Strand 5
A
428 435anti-parallel
Strand 6
A
261 270anti-parallel
Strand 7
A
3 11anti-parallel
Strand 8
A
240 248anti-parallel
Strand 9
A
195 202anti-parallel
Strand 10
A
119 124parallel
Strand 11
A
167 171parallel
Strand 12
B
167 171anti-parallel
Strand 13
B
119 124parallel
Strand 14
B
195 202parallel
Strand 15
B
240 248anti-parallel
Strand 16
B
3 11anti-parallel
Strand 17
B
261 270anti-parallel
Strand 18
B
428 435anti-parallel
Strand 19
B
417 423anti-parallel
Strand 20
B
305 307parallel
Strand 21
B
338 341parallel
Strand 22
B
391 393parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
A
59 60anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 69first strand
Strand 2
A
584 585anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 371first strand
Strand 2
A
398 399anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 459first strand
Strand 2
A
498 503anti-parallel
Strand 3
A
527 530anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 34first strand
Strand 2
B
59 60anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 69first strand
Strand 2
B
584 585anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
370 371first strand
Strand 2
B
398 399anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
454 459first strand
Strand 2
B
498 503anti-parallel
Strand 3
B
527 530anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il