Analysis of interatomic Contacts of Structural Units in PDB entry:
6MI7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MI7 entry

There are 5 chains in PDB entry 6MI7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	ILE 2	VAL 353
G	VAL 6	SER 360
A	ALA 2	LYS 231
B	ALA 2	LYS 231
C	MET 1	MET 24

There are 46 helices in PDB entry 6MI7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	2	9	Right-handed alpha
Helix 2	AA2	F	10	24	Right-handed alpha
Helix 3	AA3	F	47	52	Right-handed alpha
Helix 4	AA4	F	55	59	Right-handed 310
Helix 5	AA5	F	63	82	Right-handed alpha
Helix 6	AA6	F	84	89	Right-handed alpha
Helix 7	AA7	F	95	119	Right-handed alpha
Helix 8	AA8	F	121	126	Right-handed alpha
Helix 9	AA9	F	269	284	Right-handed alpha
Helix 10	AB1	F	294	299	Right-handed alpha
Helix 11	AB2	F	299	319	Right-handed alpha
Helix 12	AB3	F	331	345	Right-handed alpha
Helix 13	AB4	G	7	33	Right-handed alpha
Helix 14	AB5	G	54	59	Right-handed alpha
Helix 15	AB6	G	59	64	Right-handed alpha
Helix 16	AB7	G	77	82	Right-handed alpha
Helix 17	AB8	G	88	93	Right-handed alpha
Helix 18	AB9	G	94	96	Right-handed 310
Helix 19	AC1	G	98	109	Right-handed alpha
Helix 20	AC2	G	110	123	Right-handed alpha
Helix 21	AC3	G	124	131	Right-handed alpha
Helix 22	AC4	G	131	136	Right-handed alpha
Helix 23	AC5	G	269	280	Right-handed alpha
Helix 24	AC6	G	282	293	Right-handed alpha
Helix 25	AC7	G	306	318	Right-handed alpha
Helix 26	AC8	G	319	324	Right-handed alpha
Helix 27	AC9	G	325	333	Right-handed alpha
Helix 28	AD1	G	343	356	Right-handed alpha
Helix 29	AD2	A	42	51	Right-handed alpha
Helix 30	AD3	A	71	73	Right-handed 310
Helix 31	AD4	A	74	79	Right-handed alpha
Helix 32	AD5	A	94	100	Right-handed alpha
Helix 33	AD6	A	101	105	Right-handed 310
Helix 34	AD7	A	112	123	Right-handed alpha
Helix 35	AD8	A	139	153	Right-handed alpha
Helix 36	AD9	A	172	186	Right-handed alpha
Helix 37	AE1	A	196	201	Right-handed alpha
Helix 38	AE2	B	41	50	Right-handed alpha
Helix 39	AE3	B	71	76	Right-handed alpha
Helix 40	AE4	B	94	103	Right-handed alpha
Helix 41	AE5	B	113	125	Right-handed alpha
Helix 42	AE6	B	143	153	Right-handed alpha
Helix 43	AE7	B	172	183	Right-handed alpha
Helix 44	AE8	B	196	201	Right-handed alpha
Helix 45	AE9	B	220	224	Right-handed 310
Helix 46	AF1	C	4	21	Right-handed alpha

There are 4 sheets in PDB entry 6MI7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	27	first strand
Strand 2	A	3	12	anti-parallel
Strand 3	A	59	62	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	82	first strand
Strand 2	A	158	160	parallel
Strand 3	A	189	192	parallel
Strand 4	A	31	35	parallel
Strand 5	A	208	211	parallel
Strand 6	A	214	217	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	19	first strand
Strand 2	B	4	13	anti-parallel
Strand 3	B	57	62	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	33	first strand
Strand 2	B	189	193	parallel
Strand 3	B	158	162	parallel
Strand 4	B	80	83	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MI7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MI7