Analysis of interatomic Contacts of Structural Units in PDB entry:
6MI8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MI8 entry

There are 4 chains in PDB entry 6MI8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	GLY 236
B	ALA 2	GLY 236
F	ILE 3	ASP 349
G	VAL 6	TRP 354

There are 45 helices in PDB entry 6MI8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	51	Right-handed alpha
Helix 2	AA2	A	71	79	Right-handed alpha
Helix 3	AA3	A	94	104	Right-handed alpha
Helix 4	AA4	A	110	126	Right-handed alpha
Helix 5	AA5	A	127	131	Right-handed 310
Helix 6	AA6	A	139	153	Right-handed alpha
Helix 7	AA7	A	169	187	Right-handed alpha
Helix 8	AA8	A	196	201	Right-handed alpha
Helix 9	AA9	A	220	227	Right-handed alpha
Helix 10	AB1	A	227	234	Right-handed alpha
Helix 11	AB2	B	41	51	Right-handed alpha
Helix 12	AB3	B	71	79	Right-handed alpha
Helix 13	AB4	B	94	104	Right-handed alpha
Helix 14	AB5	B	110	126	Right-handed alpha
Helix 15	AB6	B	127	131	Right-handed 310
Helix 16	AB7	B	139	153	Right-handed alpha
Helix 17	AB8	B	169	187	Right-handed alpha
Helix 18	AB9	B	196	201	Right-handed alpha
Helix 19	AC1	B	220	227	Right-handed alpha
Helix 20	AC2	B	227	234	Right-handed alpha
Helix 21	AC3	F	5	25	Right-handed alpha
Helix 22	AC4	F	27	32	Right-handed alpha
Helix 23	AC5	F	32	41	Right-handed alpha
Helix 24	AC6	F	44	54	Right-handed alpha
Helix 25	AC7	F	55	82	Right-handed alpha
Helix 26	AC8	F	84	89	Right-handed alpha
Helix 27	AC9	F	94	119	Right-handed alpha
Helix 28	AD1	F	120	127	Right-handed alpha
Helix 29	AD2	F	267	287	Right-handed alpha
Helix 30	AD3	F	296	298	Right-handed 310
Helix 31	AD4	F	299	319	Right-handed alpha
Helix 32	AD5	F	330	348	Right-handed alpha
Helix 33	AD6	G	7	42	Right-handed alpha
Helix 34	AD7	G	59	85	Right-handed alpha
Helix 35	AD8	G	87	96	Right-handed alpha
Helix 36	AD9	G	98	105	Right-handed alpha
Helix 37	AE1	G	105	124	Right-handed alpha
Helix 38	AE2	G	124	135	Right-handed alpha
Helix 39	AE3	G	136	139	Right-handed 310
Helix 40	AE4	G	250	260	Right-handed alpha
Helix 41	AE5	G	273	280	Right-handed alpha
Helix 42	AE6	G	282	298	Right-handed alpha
Helix 43	AE7	G	308	331	Right-handed alpha
Helix 44	AE8	G	332	334	Right-handed 310
Helix 45	AE9	G	336	352	Right-handed alpha

There are 4 sheets in PDB entry 6MI8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	13	first strand
Strand 2	A	16	27	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	82	first strand
Strand 2	A	158	160	parallel
Strand 3	A	189	192	parallel
Strand 4	A	31	35	parallel
Strand 5	A	206	211	parallel
Strand 6	A	214	219	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	13	first strand
Strand 2	B	16	27	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	82	first strand
Strand 2	B	158	160	parallel
Strand 3	B	189	192	parallel
Strand 4	B	31	35	parallel
Strand 5	B	206	211	parallel
Strand 6	B	214	219	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MI8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MI8