Analysis of interatomic Contacts of Structural Units in PDB entry:
6MID

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MID entry

There are 8 chains in PDB entry 6MID (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 1	ALA 501
B	ALA 1	SER 75
C	ILE 1	ALA 501
D	ALA 1	SER 75
E	ILE 1	ALA 501
F	ALA 1	SER 75
H	VAL 2	SER 128
L	GLN 1	LEU 110

There are 49 helices in PDB entry 6MID. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	82	86	Right-handed 310
Helix 2	AA2	A	100	104	Right-handed 310
Helix 3	AA3	A	131	135	Right-handed 310
Helix 4	AA4	A	148	152	Right-handed 310
Helix 5	AA5	A	197	199	Right-handed 310
Helix 6	AA6	A	215	219	Right-handed alpha
Helix 7	AA7	A	238	241	Right-handed 310
Helix 8	AA8	A	262	267	Right-handed alpha
Helix 9	AA9	A	405	425	Right-handed alpha
Helix 10	AB1	A	426	431	Right-handed 310
Helix 11	AB2	A	440	455	Right-handed alpha
Helix 12	AB3	A	461	475	Right-handed alpha
Helix 13	AB4	A	484	500	Right-handed alpha
Helix 14	AB5	B	6	11	Right-handed 310
Helix 15	AB6	B	27	39	Right-handed alpha
Helix 16	AB7	B	40	50	Right-handed alpha
Helix 17	AB8	B	58	71	Right-handed alpha
Helix 18	AB9	C	131	133	Right-handed 310
Helix 19	AC1	C	148	152	Right-handed 310
Helix 20	AC2	C	197	199	Right-handed 310
Helix 21	AC3	C	215	219	Right-handed alpha
Helix 22	AC4	C	238	241	Right-handed 310
Helix 23	AC5	C	261	270	Right-handed alpha
Helix 24	AC6	C	296	298	Right-handed 310
Helix 25	AC7	C	405	424	Right-handed alpha
Helix 26	AC8	C	426	431	Right-handed 310
Helix 27	AC9	C	440	455	Right-handed alpha
Helix 28	AD1	C	462	475	Right-handed alpha
Helix 29	AD2	C	481	485	Right-handed 310
Helix 30	AD3	C	488	500	Right-handed alpha
Helix 31	AD4	D	26	39	Right-handed alpha
Helix 32	AD5	D	40	54	Right-handed alpha
Helix 33	AD6	D	56	71	Right-handed alpha
Helix 34	AD7	E	131	133	Right-handed 310
Helix 35	AD8	E	148	152	Right-handed 310
Helix 36	AD9	E	197	199	Right-handed 310
Helix 37	AE1	E	215	219	Right-handed alpha
Helix 38	AE2	E	238	242	Right-handed 310
Helix 39	AE3	E	261	267	Right-handed alpha
Helix 40	AE4	E	405	424	Right-handed alpha
Helix 41	AE5	E	425	431	Right-handed 310
Helix 42	AE6	E	440	455	Right-handed alpha
Helix 43	AE7	E	461	477	Right-handed alpha
Helix 44	AE8	E	488	500	Right-handed alpha
Helix 45	AE9	F	6	11	Right-handed 310
Helix 46	AF1	F	27	39	Right-handed alpha
Helix 47	AF2	F	40	54	Right-handed alpha
Helix 48	AF3	F	56	71	Right-handed alpha
Helix 49	AF4	H	73	77	Right-handed 310

There are 37 sheets in PDB entry 6MID. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	30	34	parallel
Strand 3	A	41	50	anti-parallel
Strand 4	A	137	143	anti-parallel
Strand 5	A	164	169	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	30	34	parallel
Strand 3	A	41	50	anti-parallel
Strand 4	A	282	284	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	24	first strand
Strand 2	A	290	294	anti-parallel
Strand 3	A	187	191	anti-parallel
Strand 4	A	175	177	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	126	129	anti-parallel
Strand 3	A	201	206	anti-parallel
Strand 4	A	209	214	anti-parallel
Strand 5	A	273	275	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	124	first strand
Strand 2	A	58	62	anti-parallel
Strand 3	A	225	226	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	73	first strand
Strand 2	A	109	119	anti-parallel
Strand 3	A	90	99	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	244	first strand
Strand 2	A	256	257	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	320	first strand
Strand 2	A	326	327	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	333	first strand
Strand 2	A	371	375	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	364	365	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	346	first strand
Strand 2	A	383	389	anti-parallel
Strand 3	A	396	402	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	358	first strand
Strand 2	A	378	379	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	31	33	parallel
Strand 3	C	41	50	anti-parallel
Strand 4	C	135	143	anti-parallel
Strand 5	C	164	169	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	31	33	parallel
Strand 3	C	41	50	anti-parallel
Strand 4	C	282	284	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	26	first strand
Strand 2	C	288	294	anti-parallel
Strand 3	C	184	189	anti-parallel
Strand 4	C	175	180	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	128	129	anti-parallel
Strand 3	C	201	205	anti-parallel
Strand 4	C	210	214	anti-parallel
Strand 5	C	273	275	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	95	first strand
Strand 2	C	112	124	anti-parallel
Strand 3	C	58	73	anti-parallel
Strand 4	C	225	226	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	99	first strand
Strand 2	C	109	110	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	247	first strand
Strand 2	C	253	257	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	320	first strand
Strand 2	C	326	333	anti-parallel
Strand 3	C	371	378	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	340	first strand
Strand 2	C	364	365	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	354	first strand
Strand 2	C	344	347	anti-parallel
Strand 3	C	384	388	anti-parallel
Strand 4	C	399	401	anti-parallel

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There are 9 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	30	34	parallel
Strand 3	E	41	50	anti-parallel
Strand 4	E	282	284	anti-parallel
Strand 5	E	274	277	anti-parallel
Strand 6	E	209	214	anti-parallel
Strand 7	E	201	206	anti-parallel
Strand 8	E	126	129	anti-parallel
Strand 9	E	54	56	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	30	34	parallel
Strand 3	E	41	50	anti-parallel
Strand 4	E	135	143	anti-parallel
Strand 5	E	164	169	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	24	first strand
Strand 2	E	290	294	anti-parallel
Strand 3	E	184	188	anti-parallel
Strand 4	E	176	180	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	59	first strand
Strand 2	E	225	226	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	73	first strand
Strand 2	E	112	121	anti-parallel
Strand 3	E	90	95	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	99	first strand
Strand 2	E	109	110	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	319	320	first strand
Strand 2	E	326	327	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	329	333	first strand
Strand 2	E	371	375	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	344	346	first strand
Strand 2	E	383	388	anti-parallel
Strand 3	E	399	402	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	7	first strand
Strand 2	H	18	23	anti-parallel
Strand 3	H	79	83	anti-parallel
Strand 4	H	68	71	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	124	125	parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	60	first strand
Strand 2	H	46	51	anti-parallel
Strand 3	H	34	39	anti-parallel
Strand 4	H	93	95	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	105	109	parallel
Strand 3	L	86	93	anti-parallel
Strand 4	L	35	39	anti-parallel
Strand 5	L	46	47	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	105	109	parallel
Strand 3	L	86	93	anti-parallel
Strand 4	L	98	101	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	17	23	first strand
Strand 2	L	71	77	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MID

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MID