Analysis of interatomic Contacts of Structural Units in PDB entry:
6MIG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MIG entry

There are 5 chains in PDB entry 6MIG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 24ARG 278
B
 C 1 T 5
B
 T 8 T 8
G
 A 9 A 9
G
 A 12 G 16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6MIG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 29Right-handed alpha
Helix 2
AA2
A
33 38Right-handed alpha
Helix 3
AA3
A
67 84Right-handed alpha
Helix 4
AA4
A
115 120Right-handed alpha
Helix 5
AA5
A
131 137Right-handed alpha
Helix 6
AA6
A
154 158Right-handed 310
Helix 7
AA7
A
164 169Right-handed 310
Helix 8
AA8
A
194 214Right-handed alpha
Helix 9
AA9
A
232 251Right-handed alpha
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There are 4 sheets in PDB entry 6MIG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
180 185anti-parallel
Strand 3
A
170 173anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 100first strand
Strand 2
A
111 113anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 222first strand
Strand 2
A
225 230anti-parallel
Strand 3
A
145 150anti-parallel
Strand 4
A
260 263anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 268first strand
Strand 2
A
271 274anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il