Analysis of interatomic Contacts of Structural Units in PDB entry:
6MII

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MII entry

There are 3 chains in PDB entry 6MII (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 7	MET 604
B	GLN 7	MET 604
C	GLN 7	LEU 85

There are154 helices in PDB entry 6MII. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	21	Right-handed alpha
Helix 2	AA2	A	28	40	Right-handed alpha
Helix 3	AA3	A	49	56	Right-handed alpha
Helix 4	AA4	A	56	66	Right-handed alpha
Helix 5	AA5	A	66	86	Right-handed alpha
Helix 6	AA6	A	87	90	Right-handed 310
Helix 7	AA7	A	108	112	Right-handed 310
Helix 8	AA8	A	113	117	Right-handed 310
Helix 9	AA9	A	201	204	Right-handed 310
Helix 10	AB1	A	220	222	Right-handed 310
Helix 11	AB2	A	276	287	Right-handed alpha
Helix 12	AB3	A	290	298	Right-handed alpha
Helix 13	AB4	A	306	319	Right-handed alpha
Helix 14	AB5	A	345	357	Right-handed alpha
Helix 15	AB6	A	369	374	Right-handed alpha
Helix 16	AB7	A	391	396	Right-handed alpha
Helix 17	AB8	A	405	409	Right-handed 310
Helix 18	AB9	A	410	415	Right-handed alpha
Helix 19	AC1	A	417	423	Right-handed alpha
Helix 20	AC2	A	460	465	Right-handed alpha
Helix 21	AC3	A	467	472	Right-handed alpha
Helix 22	AC4	A	486	501	Right-handed alpha
Helix 23	AC5	A	509	524	Right-handed alpha
Helix 24	AC6	A	529	549	Right-handed alpha
Helix 25	AC7	A	558	576	Right-handed alpha
Helix 26	AC8	A	582	600	Right-handed alpha
Helix 27	AC9	B	10	21	Right-handed alpha
Helix 28	AD1	B	28	41	Right-handed alpha
Helix 29	AD2	B	49	56	Right-handed alpha
Helix 30	AD3	B	56	66	Right-handed alpha
Helix 31	AD4	B	66	86	Right-handed alpha
Helix 32	AD5	B	87	90	Right-handed 310
Helix 33	AD6	B	108	112	Right-handed 310
Helix 34	AD7	B	113	117	Right-handed 310
Helix 35	AD8	B	201	204	Right-handed 310
Helix 36	AD9	B	220	222	Right-handed 310
Helix 37	AE1	B	276	287	Right-handed alpha
Helix 38	AE2	B	290	298	Right-handed alpha
Helix 39	AE3	B	306	319	Right-handed alpha
Helix 40	AE4	B	345	357	Right-handed alpha
Helix 41	AE5	B	369	374	Right-handed alpha
Helix 42	AE6	B	391	396	Right-handed alpha
Helix 43	AE7	B	405	409	Right-handed 310
Helix 44	AE8	B	410	415	Right-handed alpha
Helix 45	AE9	B	417	423	Right-handed alpha
Helix 46	AF1	B	460	465	Right-handed alpha
Helix 47	AF2	B	467	473	Right-handed alpha
Helix 48	AF3	B	486	500	Right-handed alpha
Helix 49	AF4	B	509	524	Right-handed alpha
Helix 50	AF5	B	529	549	Right-handed alpha
Helix 51	AF6	B	558	576	Right-handed alpha
Helix 52	AF7	B	582	600	Right-handed alpha
Helix 53	AF8	C	9	21	Right-handed alpha
Helix 54	AF9	C	28	40	Right-handed alpha
Helix 55	AG1	C	49	56	Right-handed alpha
Helix 56	AG2	C	56	66	Right-handed alpha
Helix 57	AG3	C	66	86	Right-handed alpha
Helix 58	AG4	C	87	90	Right-handed 310
Helix 59	AG5	C	108	112	Right-handed 310
Helix 60	AG6	C	113	117	Right-handed 310
Helix 61	AG7	C	201	204	Right-handed 310
Helix 62	AG8	C	220	222	Right-handed 310
Helix 63	AG9	C	276	287	Right-handed alpha
Helix 64	AH1	C	290	298	Right-handed alpha
Helix 65	AH2	C	306	319	Right-handed alpha
Helix 66	AH3	C	345	357	Right-handed alpha
Helix 67	AH4	C	369	374	Right-handed alpha
Helix 68	AH5	C	391	396	Right-handed alpha
Helix 69	AH6	C	405	409	Right-handed 310
Helix 70	AH7	C	410	415	Right-handed alpha
Helix 71	AH8	C	417	423	Right-handed alpha
Helix 72	AH9	C	460	465	Right-handed alpha
Helix 73	AI1	C	467	472	Right-handed alpha
Helix 74	AI2	C	486	501	Right-handed alpha
Helix 75	AI3	C	509	524	Right-handed alpha
Helix 76	AI4	C	529	550	Right-handed alpha
Helix 77	AI5	C	558	577	Right-handed alpha
Helix 78	AI6	C	582	601	Right-handed alpha
Helix 79	AI7	D	10	21	Right-handed alpha
Helix 80	AI8	D	28	41	Right-handed alpha
Helix 81	AI9	D	49	56	Right-handed alpha
Helix 82	AJ1	D	56	66	Right-handed alpha
Helix 83	AJ2	D	66	86	Right-handed alpha
Helix 84	AJ3	D	87	90	Right-handed 310
Helix 85	AJ4	D	113	117	Right-handed 310
Helix 86	AJ5	D	201	204	Right-handed 310
Helix 87	AJ6	D	220	222	Right-handed 310
Helix 88	AJ7	D	276	287	Right-handed alpha
Helix 89	AJ8	D	290	298	Right-handed alpha
Helix 90	AJ9	D	306	319	Right-handed alpha
Helix 91	AK1	D	345	357	Right-handed alpha
Helix 92	AK2	D	369	374	Right-handed alpha
Helix 93	AK3	D	391	396	Right-handed alpha
Helix 94	AK4	D	406	409	Right-handed 310
Helix 95	AK5	D	410	415	Right-handed alpha
Helix 96	AK6	D	417	423	Right-handed alpha
Helix 97	AK7	D	460	465	Right-handed alpha
Helix 98	AK8	D	467	474	Right-handed alpha
Helix 99	AK9	D	486	501	Right-handed alpha
Helix 100	AL1	D	509	524	Right-handed alpha
Helix 101	AL2	D	529	550	Right-handed alpha
Helix 102	AL3	D	558	577	Right-handed alpha
Helix 103	AL4	D	582	600	Right-handed alpha
Helix 104	AL5	E	10	21	Right-handed alpha
Helix 105	AL6	E	28	41	Right-handed alpha
Helix 106	AL7	E	49	56	Right-handed alpha
Helix 107	AL8	E	56	66	Right-handed alpha
Helix 108	AL9	E	66	86	Right-handed alpha
Helix 109	AM1	E	87	90	Right-handed 310
Helix 110	AM2	E	108	112	Right-handed 310
Helix 111	AM3	E	113	117	Right-handed 310
Helix 112	AM4	E	200	204	Right-handed 310
Helix 113	AM5	E	220	222	Right-handed 310
Helix 114	AM6	E	276	286	Right-handed alpha
Helix 115	AM7	E	290	298	Right-handed alpha
Helix 116	AM8	E	306	319	Right-handed alpha
Helix 117	AM9	E	345	357	Right-handed alpha
Helix 118	AN1	E	369	374	Right-handed alpha
Helix 119	AN2	E	391	396	Right-handed alpha
Helix 120	AN3	E	405	409	Right-handed 310
Helix 121	AN4	E	410	415	Right-handed alpha
Helix 122	AN5	E	417	423	Right-handed alpha
Helix 123	AN6	E	460	465	Right-handed alpha
Helix 124	AN7	E	467	472	Right-handed alpha
Helix 125	AN8	E	486	501	Right-handed alpha
Helix 126	AN9	E	509	524	Right-handed alpha
Helix 127	AO1	E	529	550	Right-handed alpha
Helix 128	AO2	E	558	576	Right-handed alpha
Helix 129	AO3	E	582	600	Right-handed alpha
Helix 130	AO4	F	10	21	Right-handed alpha
Helix 131	AO5	F	28	41	Right-handed alpha
Helix 132	AO6	F	49	56	Right-handed alpha
Helix 133	AO7	F	56	66	Right-handed alpha
Helix 134	AO8	F	66	86	Right-handed alpha
Helix 135	AO9	F	87	90	Right-handed 310
Helix 136	AP1	F	113	117	Right-handed 310
Helix 137	AP2	F	200	204	Right-handed 310
Helix 138	AP3	F	220	222	Right-handed 310
Helix 139	AP4	F	276	287	Right-handed alpha
Helix 140	AP5	F	290	298	Right-handed alpha
Helix 141	AP6	F	306	319	Right-handed alpha
Helix 142	AP7	F	345	357	Right-handed alpha
Helix 143	AP8	F	369	374	Right-handed alpha
Helix 144	AP9	F	391	396	Right-handed alpha
Helix 145	AQ1	F	405	409	Right-handed 310
Helix 146	AQ2	F	410	415	Right-handed alpha
Helix 147	AQ3	F	416	423	Right-handed alpha
Helix 148	AQ4	F	459	465	Right-handed alpha
Helix 149	AQ5	F	467	472	Right-handed alpha
Helix 150	AQ6	F	486	501	Right-handed alpha
Helix 151	AQ7	F	509	524	Right-handed alpha
Helix 152	AQ8	F	529	550	Right-handed alpha
Helix 153	AQ9	F	558	576	Right-handed alpha
Helix 154	AR1	F	582	600	Right-handed alpha

There are 44 sheets in PDB entry 6MII. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	48	first strand
Strand 2	A	97	101	parallel

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There are 26 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	253	first strand
Strand 2	D	134	139	anti-parallel
Strand 3	D	188	199	anti-parallel
Strand 4	D	212	218	anti-parallel
Strand 5	D	252	264	parallel
Strand 6	E	134	139	anti-parallel
Strand 7	E	188	198	anti-parallel
Strand 8	E	212	218	anti-parallel
Strand 9	E	252	264	parallel
Strand 10	F	134	139	anti-parallel
Strand 11	F	188	198	anti-parallel
Strand 12	F	212	218	anti-parallel
Strand 13	F	252	264	parallel
Strand 14	A	134	139	anti-parallel
Strand 15	A	188	199	anti-parallel
Strand 16	A	120	130	anti-parallel
Strand 17	A	230	240	anti-parallel
Strand 18	A	252	261	anti-parallel
Strand 19	B	134	139	anti-parallel
Strand 20	B	188	199	anti-parallel
Strand 21	B	212	218	anti-parallel
Strand 22	B	252	264	parallel
Strand 23	C	134	139	anti-parallel
Strand 24	C	188	199	anti-parallel
Strand 25	C	212	218	anti-parallel
Strand 26	C	255	264	parallel

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There are 30 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	253	first strand
Strand 2	D	134	139	anti-parallel
Strand 3	D	188	199	anti-parallel
Strand 4	D	120	130	anti-parallel
Strand 5	D	230	240	anti-parallel
Strand 6	D	252	264	anti-parallel
Strand 7	E	134	139	anti-parallel
Strand 8	E	188	198	anti-parallel
Strand 9	E	120	130	anti-parallel
Strand 10	E	230	240	anti-parallel
Strand 11	E	252	264	anti-parallel
Strand 12	F	134	139	anti-parallel
Strand 13	F	188	198	anti-parallel
Strand 14	F	120	130	anti-parallel
Strand 15	F	230	240	anti-parallel
Strand 16	F	252	264	anti-parallel
Strand 17	A	134	139	anti-parallel
Strand 18	A	188	199	anti-parallel
Strand 19	A	212	218	anti-parallel
Strand 20	A	252	261	parallel
Strand 21	B	134	139	anti-parallel
Strand 22	B	188	199	anti-parallel
Strand 23	B	120	130	anti-parallel
Strand 24	B	230	240	anti-parallel
Strand 25	B	252	264	anti-parallel
Strand 26	C	134	139	anti-parallel
Strand 27	C	188	199	anti-parallel
Strand 28	C	120	130	anti-parallel
Strand 29	C	230	239	anti-parallel
Strand 30	C	255	264	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	154	first strand
Strand 2	A	141	145	anti-parallel
Strand 3	A	179	182	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	324	first strand
Strand 2	A	329	330	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	364	first strand
Strand 2	A	400	404	parallel
Strand 3	A	442	447	parallel
Strand 4	A	336	340	parallel
Strand 5	A	476	480	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	379	first strand
Strand 2	A	386	390	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	430	first strand
Strand 2	A	433	438	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	527	528	first strand
Strand 2	A	580	581	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	48	first strand
Strand 2	B	97	101	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	154	first strand
Strand 2	B	141	145	anti-parallel
Strand 3	B	179	182	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	324	first strand
Strand 2	B	329	330	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	360	364	first strand
Strand 2	B	400	404	parallel
Strand 3	B	442	447	parallel
Strand 4	B	336	340	parallel
Strand 5	B	476	480	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	379	first strand
Strand 2	B	386	390	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	425	430	first strand
Strand 2	B	433	438	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	527	528	first strand
Strand 2	B	580	581	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	48	first strand
Strand 2	C	97	101	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	154	first strand
Strand 2	C	141	144	anti-parallel
Strand 3	C	180	182	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	323	324	first strand
Strand 2	C	329	330	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	360	364	first strand
Strand 2	C	400	404	parallel
Strand 3	C	442	447	parallel
Strand 4	C	336	340	parallel
Strand 5	C	476	480	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	379	first strand
Strand 2	C	386	390	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	425	430	first strand
Strand 2	C	433	438	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	527	528	first strand
Strand 2	C	580	581	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	48	first strand
Strand 2	D	97	101	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	154	first strand
Strand 2	D	141	145	anti-parallel
Strand 3	D	179	182	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	323	324	first strand
Strand 2	D	329	330	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	360	364	first strand
Strand 2	D	400	404	parallel
Strand 3	D	442	447	parallel
Strand 4	D	336	340	parallel
Strand 5	D	476	480	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	375	379	first strand
Strand 2	D	386	390	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	425	430	first strand
Strand 2	D	433	438	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	527	528	first strand
Strand 2	D	580	581	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	48	first strand
Strand 2	E	97	101	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	152	154	first strand
Strand 2	E	141	145	anti-parallel
Strand 3	E	179	182	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	323	324	first strand
Strand 2	E	329	330	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	360	364	first strand
Strand 2	E	400	404	parallel
Strand 3	E	442	447	parallel
Strand 4	E	336	340	parallel
Strand 5	E	476	480	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	375	379	first strand
Strand 2	E	386	390	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	425	430	first strand
Strand 2	E	433	438	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	527	528	first strand
Strand 2	E	580	581	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	48	first strand
Strand 2	F	97	101	parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	152	153	first strand
Strand 2	F	142	145	anti-parallel
Strand 3	F	179	182	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	323	324	first strand
Strand 2	F	329	330	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	360	364	first strand
Strand 2	F	400	404	parallel
Strand 3	F	442	447	parallel
Strand 4	F	336	340	parallel
Strand 5	F	476	480	parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	375	379	first strand
Strand 2	F	386	390	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	425	430	first strand
Strand 2	F	433	438	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	527	528	first strand
Strand 2	F	580	581	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MII

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MII