Analysis of interatomic Contacts of Structural Units in PDB entry:
6MIJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MIJ entry

There is 1 chain in PDB entry 6MIJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 9ALA 396
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6MIJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 41Right-handed alpha
Helix 2
AA2
A
46 52Right-handed alpha
Helix 3
AA3
A
84 94Right-handed alpha
Helix 4
AA4
A
113 127Right-handed alpha
Helix 5
AA5
A
137 141Right-handed 310
Helix 6
AA6
A
143 161Right-handed alpha
Helix 7
AA7
A
164 168Right-handed 310
Helix 8
AA8
A
174 180Right-handed alpha
Helix 9
AA9
A
187 202Right-handed alpha
Helix 10
AB1
A
207 211Right-handed 310
Helix 11
AB2
A
285 289Right-handed 310
Helix 12
AB3
A
315 319Right-handed 310
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There are 7 sheets in PDB entry 6MIJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 71first strand
Strand 2
A
76 81anti-parallel
Strand 3
A
12 18parallel
Strand 4
A
101 107parallel
Strand 5
A
131 136parallel
Strand 6
A
170 172parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
62 64anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
A
294 296anti-parallel
Strand 3
A
244 248anti-parallel
Strand 4
A
254 263anti-parallel
Strand 5
A
276 281anti-parallel
Strand 6
A
227 233anti-parallel
Strand 7
A
219 223anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
A
294 296anti-parallel
Strand 3
A
244 248anti-parallel
Strand 4
A
254 263anti-parallel
Strand 5
A
266 268anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 240first strand
Strand 2
A
270 272anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 313first strand
Strand 2
A
358 370anti-parallel
Strand 3
A
338 346anti-parallel
Strand 4
A
332 335anti-parallel
Strand 5
A
376 381anti-parallel
Strand 6
A
384 394anti-parallel
Strand 7
A
303 313anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
352 353anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il