Analysis of interatomic Contacts of Structural Units in PDB entry:
6MIT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MIT entry

There are 10 chains in PDB entry 6MIT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	LEU 241
B	ALA 2	LEU 241
C	MET 1	THR 189
F	MET 1	ILE 356
G	GLY 5	ARG 359
D	ALA 2	LEU 241
E	ALA 2	PHE 239
H	MET 1	THR 189
I	MET 1	ALA 358
J	GLN 2	LYS 358

There are 93 helices in PDB entry 6MIT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	51	Right-handed alpha
Helix 2	AA2	A	71	78	Right-handed alpha
Helix 3	AA3	A	94	104	Right-handed alpha
Helix 4	AA4	A	110	125	Right-handed alpha
Helix 5	AA5	A	134	138	Right-handed 310
Helix 6	AA6	A	139	153	Right-handed alpha
Helix 7	AA7	A	172	186	Right-handed alpha
Helix 8	AA8	A	196	204	Right-handed alpha
Helix 9	AA9	A	220	227	Right-handed alpha
Helix 10	AB1	A	227	234	Right-handed alpha
Helix 11	AB2	B	41	51	Right-handed alpha
Helix 12	AB3	B	71	78	Right-handed alpha
Helix 13	AB4	B	94	104	Right-handed alpha
Helix 14	AB5	B	110	125	Right-handed alpha
Helix 15	AB6	B	127	131	Right-handed 310
Helix 16	AB7	B	134	138	Right-handed 310
Helix 17	AB8	B	139	153	Right-handed alpha
Helix 18	AB9	B	169	186	Right-handed alpha
Helix 19	AC1	B	196	204	Right-handed alpha
Helix 20	AC2	B	220	227	Right-handed alpha
Helix 21	AC3	B	227	234	Right-handed alpha
Helix 22	AC4	C	2	24	Right-handed alpha
Helix 23	AC5	F	2	40	Right-handed alpha
Helix 24	AC6	F	44	55	Right-handed alpha
Helix 25	AC7	F	55	82	Right-handed alpha
Helix 26	AC8	F	83	91	Right-handed alpha
Helix 27	AC9	F	94	119	Right-handed alpha
Helix 28	AD1	F	119	135	Right-handed alpha
Helix 29	AD2	F	136	142	Right-handed alpha
Helix 30	AD3	F	250	258	Right-handed alpha
Helix 31	AD4	F	259	283	Right-handed alpha
Helix 32	AD5	F	284	287	Right-handed 310
Helix 33	AD6	F	299	321	Right-handed alpha
Helix 34	AD7	F	326	348	Right-handed alpha
Helix 35	AD8	F	350	356	Right-handed alpha
Helix 36	AD9	G	6	40	Right-handed alpha
Helix 37	AE1	G	48	67	Right-handed alpha
Helix 38	AE2	G	67	86	Right-handed alpha
Helix 39	AE3	G	88	95	Right-handed alpha
Helix 40	AE4	G	98	124	Right-handed alpha
Helix 41	AE5	G	124	142	Right-handed alpha
Helix 42	AE6	G	143	148	Right-handed alpha
Helix 43	AE7	G	235	245	Right-handed alpha
Helix 44	AE8	G	250	265	Right-handed alpha
Helix 45	AE9	G	268	280	Right-handed alpha
Helix 46	AF1	G	280	298	Right-handed alpha
Helix 47	AF2	G	304	330	Right-handed alpha
Helix 48	AF3	G	336	358	Right-handed alpha
Helix 49	AF4	D	41	51	Right-handed alpha
Helix 50	AF5	D	71	77	Right-handed alpha
Helix 51	AF6	D	94	104	Right-handed alpha
Helix 52	AF7	D	110	125	Right-handed alpha
Helix 53	AF8	D	134	138	Right-handed 310
Helix 54	AF9	D	139	155	Right-handed alpha
Helix 55	AG1	D	171	186	Right-handed alpha
Helix 56	AG2	D	196	202	Right-handed alpha
Helix 57	AG3	D	220	226	Right-handed alpha
Helix 58	AG4	D	227	234	Right-handed alpha
Helix 59	AG5	E	41	51	Right-handed alpha
Helix 60	AG6	E	71	78	Right-handed alpha
Helix 61	AG7	E	94	104	Right-handed alpha
Helix 62	AG8	E	110	125	Right-handed alpha
Helix 63	AG9	E	127	131	Right-handed 310
Helix 64	AH1	E	134	138	Right-handed 310
Helix 65	AH2	E	139	154	Right-handed alpha
Helix 66	AH3	E	169	186	Right-handed alpha
Helix 67	AH4	E	196	204	Right-handed alpha
Helix 68	AH5	E	220	227	Right-handed alpha
Helix 69	AH6	E	227	234	Right-handed alpha
Helix 70	AH7	H	2	24	Right-handed alpha
Helix 71	AH8	I	2	39	Right-handed alpha
Helix 72	AH9	I	44	55	Right-handed alpha
Helix 73	AI1	I	55	82	Right-handed alpha
Helix 74	AI2	I	84	91	Right-handed alpha
Helix 75	AI3	I	94	135	Right-handed alpha
Helix 76	AI4	I	250	258	Right-handed alpha
Helix 77	AI5	I	259	283	Right-handed alpha
Helix 78	AI6	I	284	288	Right-handed 310
Helix 79	AI7	I	299	322	Right-handed alpha
Helix 80	AI8	I	326	348	Right-handed alpha
Helix 81	AI9	I	350	358	Right-handed alpha
Helix 82	AJ1	J	5	40	Right-handed alpha
Helix 83	AJ2	J	48	59	Right-handed alpha
Helix 84	AJ3	J	59	86	Right-handed alpha
Helix 85	AJ4	J	88	96	Right-handed alpha
Helix 86	AJ5	J	98	123	Right-handed alpha
Helix 87	AJ6	J	123	140	Right-handed alpha
Helix 88	AJ7	J	233	242	Right-handed alpha
Helix 89	AJ8	J	250	265	Right-handed alpha
Helix 90	AJ9	J	269	280	Right-handed alpha
Helix 91	AK1	J	280	297	Right-handed alpha
Helix 92	AK2	J	304	333	Right-handed alpha
Helix 93	AK3	J	336	357	Right-handed alpha

There are 19 sheets in PDB entry 6MIT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	22	first strand
Strand 2	A	3	12	anti-parallel
Strand 3	A	25	27	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	22	first strand
Strand 2	A	3	12	anti-parallel
Strand 3	A	57	62	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	83	first strand
Strand 2	A	158	162	parallel
Strand 3	A	189	193	parallel
Strand 4	A	30	35	parallel
Strand 5	A	206	209	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	26	first strand
Strand 2	B	4	13	anti-parallel
Strand 3	B	57	62	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	83	first strand
Strand 2	B	158	162	parallel
Strand 3	B	189	193	parallel
Strand 4	B	31	35	parallel
Strand 5	B	206	211	parallel
Strand 6	B	214	219	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	44	first strand
Strand 2	C	66	70	anti-parallel
Strand 3	C	75	79	anti-parallel
Strand 4	C	100	103	anti-parallel
Strand 5	C	108	119	anti-parallel
Strand 6	C	126	137	anti-parallel
Strand 7	C	149	153	anti-parallel
Strand 8	C	156	160	anti-parallel
Strand 9	C	179	182	anti-parallel

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There are 15 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	174	first strand
Strand 2	C	163	166	anti-parallel
Strand 3	C	142	145	anti-parallel
Strand 4	C	126	137	anti-parallel
Strand 5	C	108	119	anti-parallel
Strand 6	C	92	97	anti-parallel
Strand 7	C	82	86	anti-parallel
Strand 8	C	56	64	anti-parallel
Strand 9	C	47	53	anti-parallel
Strand 10	F	222	235	anti-parallel
Strand 11	F	203	215	anti-parallel
Strand 12	F	187	196	anti-parallel
Strand 13	F	172	176	anti-parallel
Strand 14	F	157	160	anti-parallel
Strand 15	F	149	152	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	70	first strand
Strand 2	C	42	44	anti-parallel
Strand 3	F	222	235	anti-parallel
Strand 4	C	47	53	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	163	164	first strand
Strand 2	F	169	170	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	152	156	first strand
Strand 2	G	159	163	anti-parallel
Strand 3	G	176	180	anti-parallel
Strand 4	G	187	191	anti-parallel
Strand 5	G	203	213	anti-parallel
Strand 6	G	194	198	anti-parallel
Strand 7	G	171	173	anti-parallel
Strand 8	G	165	167	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	152	156	first strand
Strand 2	G	159	163	anti-parallel
Strand 3	G	176	180	anti-parallel
Strand 4	G	187	191	anti-parallel
Strand 5	G	203	213	anti-parallel
Strand 6	G	221	230	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	27	first strand
Strand 2	D	3	12	anti-parallel
Strand 3	D	57	62	anti-parallel
Strand 4	D	65	66	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	83	first strand
Strand 2	D	158	162	parallel
Strand 3	D	189	193	parallel
Strand 4	D	30	35	parallel
Strand 5	D	206	211	parallel
Strand 6	D	214	219	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	27	first strand
Strand 2	E	3	12	anti-parallel
Strand 3	E	57	62	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	80	83	first strand
Strand 2	E	158	162	parallel
Strand 3	E	189	193	parallel
Strand 4	E	31	35	parallel
Strand 5	E	206	211	parallel
Strand 6	E	214	219	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	100	103	first strand
Strand 2	H	108	119	anti-parallel
Strand 3	H	126	137	anti-parallel
Strand 4	H	142	145	anti-parallel
Strand 5	H	163	166	anti-parallel
Strand 6	H	171	174	anti-parallel

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There are 14 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	179	181	first strand
Strand 2	H	157	160	anti-parallel
Strand 3	H	149	153	anti-parallel
Strand 4	H	126	137	anti-parallel
Strand 5	H	108	119	anti-parallel
Strand 6	H	92	97	anti-parallel
Strand 7	H	82	86	anti-parallel
Strand 8	H	58	64	anti-parallel
Strand 9	H	47	52	anti-parallel
Strand 10	I	222	231	anti-parallel
Strand 11	I	206	215	anti-parallel
Strand 12	I	187	193	anti-parallel
Strand 13	I	169	176	anti-parallel
Strand 14	I	157	164	anti-parallel

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There are 11 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	75	79	first strand
Strand 2	H	67	70	anti-parallel
Strand 3	H	42	44	anti-parallel
Strand 4	I	222	231	anti-parallel
Strand 5	H	47	52	anti-parallel
Strand 6	H	58	64	anti-parallel
Strand 7	H	82	86	anti-parallel
Strand 8	H	92	97	anti-parallel
Strand 9	H	108	119	anti-parallel
Strand 10	H	100	103	anti-parallel
Strand 11	H	75	79	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	152	156	first strand
Strand 2	J	159	163	anti-parallel
Strand 3	J	177	179	anti-parallel
Strand 4	J	188	191	anti-parallel
Strand 5	J	210	212	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MIT

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MIT