Analysis of interatomic Contacts of Structural Units in PDB entry:
6MJ3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MJ3 entry

There are 6 chains in PDB entry 6MJ3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 237	VAL 443
B	LEU 234	VAL 443
D	GLY 237	SER 444
E	LEU 234	SER 444
C	GLU 3	THR 171
F	GLU 3	THR 171

There are 17 helices in PDB entry 6MJ3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	246	251	Right-handed alpha
Helix 2	AA2	A	414	419	Right-handed alpha
Helix 3	AA3	B	246	252	Right-handed alpha
Helix 4	AA4	B	354	359	Right-handed 310
Helix 5	AA5	B	414	420	Right-handed alpha
Helix 6	AA6	D	246	251	Right-handed alpha
Helix 7	AA7	D	312	316	Right-handed 310
Helix 8	AA8	D	356	360	Right-handed 310
Helix 9	AA9	D	414	419	Right-handed alpha
Helix 10	AB1	D	432	434	Right-handed 310
Helix 11	AB2	E	246	251	Right-handed alpha
Helix 12	AB3	E	354	360	Right-handed 310
Helix 13	AB4	E	414	419	Right-handed alpha
Helix 14	AB5	E	432	434	Right-handed 310
Helix 15	AB6	C	62	66	Right-handed 310
Helix 16	AB7	F	62	66	Right-handed 310
Helix 17	AB8	F	114	116	Right-handed 310

There are 30 sheets in PDB entry 6MJ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	242	first strand
Strand 2	A	261	266	anti-parallel
Strand 3	A	300	304	anti-parallel
Strand 4	A	293	294	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	275	first strand
Strand 2	A	319	324	anti-parallel
Strand 3	A	278	279	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	275	first strand
Strand 2	A	319	324	anti-parallel
Strand 3	A	332	336	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	349	first strand
Strand 2	A	362	372	anti-parallel
Strand 3	A	404	413	anti-parallel
Strand 4	A	391	392	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	349	first strand
Strand 2	A	362	372	anti-parallel
Strand 3	A	404	413	anti-parallel
Strand 4	A	397	398	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	387	first strand
Strand 2	A	378	383	anti-parallel
Strand 3	A	423	428	anti-parallel
Strand 4	A	436	441	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	243	first strand
Strand 2	B	260	263	anti-parallel
Strand 3	B	302	304	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	351	first strand
Strand 2	B	362	372	anti-parallel
Strand 3	B	404	413	anti-parallel
Strand 4	B	391	393	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	378	383	first strand
Strand 2	B	423	428	anti-parallel
Strand 3	B	437	438	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	239	243	first strand
Strand 2	D	258	264	anti-parallel
Strand 3	D	303	307	anti-parallel
Strand 4	D	288	290	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	275	first strand
Strand 2	D	318	324	anti-parallel
Strand 3	D	278	279	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	275	first strand
Strand 2	D	318	324	anti-parallel
Strand 3	D	332	337	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	362	365	first strand
Strand 2	D	408	413	anti-parallel
Strand 3	D	391	393	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	369	370	first strand
Strand 2	D	405	406	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	377	378	first strand
Strand 2	D	423	429	anti-parallel
Strand 3	D	381	383	anti-parallel
Strand 4	D	387	388	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	377	378	first strand
Strand 2	D	423	429	anti-parallel
Strand 3	D	436	441	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	240	243	first strand
Strand 2	E	260	263	anti-parallel
Strand 3	E	303	304	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	347	351	first strand
Strand 2	E	362	372	anti-parallel
Strand 3	E	404	413	anti-parallel
Strand 4	E	391	393	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	347	351	first strand
Strand 2	E	362	372	anti-parallel
Strand 3	E	404	413	anti-parallel
Strand 4	E	397	398	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	378	382	first strand
Strand 2	E	423	428	anti-parallel
Strand 3	E	436	441	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	11	first strand
Strand 2	C	25	29	anti-parallel
Strand 3	C	55	58	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	19	first strand
Strand 2	C	82	86	parallel
Strand 3	C	67	71	anti-parallel
Strand 4	C	42	44	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	94	first strand
Strand 2	C	105	111	anti-parallel
Strand 3	C	138	142	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	135	first strand
Strand 2	C	119	125	anti-parallel
Strand 3	C	150	158	anti-parallel
Strand 4	C	161	164	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	135	first strand
Strand 2	C	119	125	anti-parallel
Strand 3	C	150	158	anti-parallel
Strand 4	C	168	170	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	13	first strand
Strand 2	F	26	30	anti-parallel
Strand 3	F	55	57	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	19	first strand
Strand 2	F	82	86	parallel
Strand 3	F	67	71	anti-parallel
Strand 4	F	42	43	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	94	first strand
Strand 2	F	109	112	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	128	133	first strand
Strand 2	F	119	125	anti-parallel
Strand 3	F	154	158	anti-parallel
Strand 4	F	161	164	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	150	152	first strand
Strand 2	F	168	170	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MJ3

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MJ3