Analysis of interatomic Contacts of Structural Units in PDB entry:
6MJF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MJF entry

There are 6 chains in PDB entry 6MJF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 8	PRO 378
B	GLY 9	PRO 378
C	PRO 8	PRO 378
D	GLY 9	PRO 378
E	GLY 9	PRO 378
F	GLY 9	PRO 378

There are105 helices in PDB entry 6MJF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	34	Right-handed alpha
Helix 2	AA2	A	44	53	Right-handed alpha
Helix 3	AA3	A	62	65	Right-handed 310
Helix 4	AA4	A	70	88	Right-handed alpha
Helix 5	AA5	A	104	117	Right-handed alpha
Helix 6	AA6	A	128	138	Right-handed alpha
Helix 7	AA7	A	151	157	Right-handed alpha
Helix 8	AA8	A	189	202	Right-handed alpha
Helix 9	AA9	A	228	231	Right-handed 310
Helix 10	AB1	A	232	237	Right-handed alpha
Helix 11	AB2	A	256	264	Right-handed alpha
Helix 12	AB3	A	295	304	Right-handed alpha
Helix 13	AB4	A	305	308	Right-handed 310
Helix 14	AB5	A	320	333	Right-handed alpha
Helix 15	AB6	A	333	343	Right-handed alpha
Helix 16	AB7	A	343	349	Right-handed alpha
Helix 17	AB8	A	355	365	Right-handed alpha
Helix 18	AB9	A	366	374	Right-handed alpha
Helix 19	AC1	B	25	34	Right-handed alpha
Helix 20	AC2	B	44	52	Right-handed alpha
Helix 21	AC3	B	62	65	Right-handed 310
Helix 22	AC4	B	70	87	Right-handed alpha
Helix 23	AC5	B	104	117	Right-handed alpha
Helix 24	AC6	B	128	137	Right-handed alpha
Helix 25	AC7	B	151	157	Right-handed alpha
Helix 26	AC8	B	189	202	Right-handed alpha
Helix 27	AC9	B	228	231	Right-handed 310
Helix 28	AD1	B	232	237	Right-handed alpha
Helix 29	AD2	B	256	264	Right-handed alpha
Helix 30	AD3	B	295	304	Right-handed alpha
Helix 31	AD4	B	305	308	Right-handed 310
Helix 32	AD5	B	320	333	Right-handed alpha
Helix 33	AD6	B	333	343	Right-handed alpha
Helix 34	AD7	B	343	349	Right-handed alpha
Helix 35	AD8	B	355	365	Right-handed alpha
Helix 36	AD9	B	366	374	Right-handed alpha
Helix 37	AE1	C	25	34	Right-handed alpha
Helix 38	AE2	C	44	53	Right-handed alpha
Helix 39	AE3	C	62	65	Right-handed 310
Helix 40	AE4	C	70	87	Right-handed alpha
Helix 41	AE5	C	104	117	Right-handed alpha
Helix 42	AE6	C	128	138	Right-handed alpha
Helix 43	AE7	C	151	157	Right-handed alpha
Helix 44	AE8	C	189	202	Right-handed alpha
Helix 45	AE9	C	228	231	Right-handed 310
Helix 46	AF1	C	232	237	Right-handed alpha
Helix 47	AF2	C	256	264	Right-handed alpha
Helix 48	AF3	C	298	303	Right-handed alpha
Helix 49	AF4	C	304	308	Right-handed 310
Helix 50	AF5	C	320	333	Right-handed alpha
Helix 51	AF6	C	333	343	Right-handed alpha
Helix 52	AF7	C	343	349	Right-handed alpha
Helix 53	AF8	C	355	365	Right-handed alpha
Helix 54	AF9	C	366	377	Right-handed alpha
Helix 55	AG1	D	25	34	Right-handed alpha
Helix 56	AG2	D	44	53	Right-handed alpha
Helix 57	AG3	D	62	65	Right-handed 310
Helix 58	AG4	D	70	88	Right-handed alpha
Helix 59	AG5	D	104	117	Right-handed alpha
Helix 60	AG6	D	128	137	Right-handed alpha
Helix 61	AG7	D	151	157	Right-handed alpha
Helix 62	AG8	D	189	202	Right-handed alpha
Helix 63	AG9	D	228	231	Right-handed 310
Helix 64	AH1	D	232	237	Right-handed alpha
Helix 65	AH2	D	256	264	Right-handed alpha
Helix 66	AH3	D	295	304	Right-handed alpha
Helix 67	AH4	D	320	333	Right-handed alpha
Helix 68	AH5	D	333	343	Right-handed alpha
Helix 69	AH6	D	343	349	Right-handed alpha
Helix 70	AH7	D	355	365	Right-handed alpha
Helix 71	AH8	D	366	377	Right-handed alpha
Helix 72	AH9	E	25	34	Right-handed alpha
Helix 73	AI1	E	44	53	Right-handed alpha
Helix 74	AI2	E	62	65	Right-handed 310
Helix 75	AI3	E	70	87	Right-handed alpha
Helix 76	AI4	E	104	117	Right-handed alpha
Helix 77	AI5	E	128	138	Right-handed alpha
Helix 78	AI6	E	151	157	Right-handed alpha
Helix 79	AI7	E	189	202	Right-handed alpha
Helix 80	AI8	E	228	231	Right-handed 310
Helix 81	AI9	E	232	237	Right-handed alpha
Helix 82	AJ1	E	256	264	Right-handed alpha
Helix 83	AJ2	E	295	304	Right-handed alpha
Helix 84	AJ3	E	320	333	Right-handed alpha
Helix 85	AJ4	E	333	343	Right-handed alpha
Helix 86	AJ5	E	343	349	Right-handed alpha
Helix 87	AJ6	E	355	365	Right-handed alpha
Helix 88	AJ7	E	366	376	Right-handed alpha
Helix 89	AJ8	F	25	35	Right-handed alpha
Helix 90	AJ9	F	44	53	Right-handed alpha
Helix 91	AK1	F	62	65	Right-handed 310
Helix 92	AK2	F	70	88	Right-handed alpha
Helix 93	AK3	F	104	117	Right-handed alpha
Helix 94	AK4	F	128	138	Right-handed alpha
Helix 95	AK5	F	151	157	Right-handed alpha
Helix 96	AK6	F	189	202	Right-handed alpha
Helix 97	AK7	F	228	231	Right-handed 310
Helix 98	AK8	F	232	237	Right-handed alpha
Helix 99	AK9	F	256	263	Right-handed alpha
Helix 100	AL1	F	295	306	Right-handed alpha
Helix 101	AL2	F	321	333	Right-handed alpha
Helix 102	AL3	F	333	343	Right-handed alpha
Helix 103	AL4	F	343	349	Right-handed alpha
Helix 104	AL5	F	355	365	Right-handed alpha
Helix 105	AL6	F	366	377	Right-handed alpha

There are 9 sheets in PDB entry 6MJF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	60	first strand
Strand 2	A	37	41	parallel
Strand 3	A	91	96	parallel
Strand 4	A	10	15	parallel
Strand 5	A	120	123	parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	226	first strand
Strand 2	A	206	211	anti-parallel
Strand 3	A	244	247	anti-parallel
Strand 4	A	166	170	anti-parallel
Strand 5	A	146	150	parallel
Strand 6	B	146	150	anti-parallel
Strand 7	B	166	170	parallel
Strand 8	B	244	247	anti-parallel
Strand 9	B	206	211	anti-parallel
Strand 10	B	221	226	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	37	41	parallel
Strand 3	B	91	96	parallel
Strand 4	B	10	15	parallel
Strand 5	B	120	123	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	60	first strand
Strand 2	C	37	41	parallel
Strand 3	C	91	96	parallel
Strand 4	C	10	15	parallel
Strand 5	C	120	123	parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	226	first strand
Strand 2	C	206	211	anti-parallel
Strand 3	C	244	247	anti-parallel
Strand 4	C	166	170	anti-parallel
Strand 5	C	146	150	parallel
Strand 6	D	146	150	anti-parallel
Strand 7	D	166	170	parallel
Strand 8	D	244	247	anti-parallel
Strand 9	D	206	211	anti-parallel
Strand 10	D	221	226	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	60	first strand
Strand 2	D	37	41	parallel
Strand 3	D	91	96	parallel
Strand 4	D	10	15	parallel
Strand 5	D	120	123	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	60	first strand
Strand 2	E	37	41	parallel
Strand 3	E	91	96	parallel
Strand 4	E	10	15	parallel
Strand 5	E	120	123	parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	221	226	first strand
Strand 2	E	206	211	anti-parallel
Strand 3	E	244	247	anti-parallel
Strand 4	E	166	170	anti-parallel
Strand 5	E	146	150	parallel
Strand 6	F	146	150	anti-parallel
Strand 7	F	166	170	parallel
Strand 8	F	244	247	anti-parallel
Strand 9	F	206	211	anti-parallel
Strand 10	F	221	226	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	60	first strand
Strand 2	F	37	41	parallel
Strand 3	F	91	96	parallel
Strand 4	F	10	15	parallel
Strand 5	F	120	123	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MJF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MJF