Analysis of interatomic Contacts of Structural Units in PDB entry:
6MJP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MJP entry

There are 5 chains in PDB entry 6MJP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	LEU 241
B	ALA 2	LEU 241
C	SER 2	TYR 175
F	MET 1	ARG 363
G	MET 1	SER 326

There are 45 helices in PDB entry 6MJP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	51	Right-handed alpha
Helix 2	AA2	A	71	79	Right-handed alpha
Helix 3	AA3	A	94	104	Right-handed alpha
Helix 4	AA4	A	110	125	Right-handed alpha
Helix 5	AA5	A	127	131	Right-handed 310
Helix 6	AA6	A	134	138	Right-handed 310
Helix 7	AA7	A	139	153	Right-handed alpha
Helix 8	AA8	A	169	185	Right-handed alpha
Helix 9	AA9	A	196	204	Right-handed alpha
Helix 10	AB1	A	220	226	Right-handed alpha
Helix 11	AB2	A	227	234	Right-handed alpha
Helix 12	AB3	B	41	51	Right-handed alpha
Helix 13	AB4	B	71	78	Right-handed alpha
Helix 14	AB5	B	94	104	Right-handed alpha
Helix 15	AB6	B	110	126	Right-handed alpha
Helix 16	AB7	B	134	138	Right-handed 310
Helix 17	AB8	B	139	154	Right-handed alpha
Helix 18	AB9	B	169	186	Right-handed alpha
Helix 19	AC1	B	196	204	Right-handed alpha
Helix 20	AC2	B	220	227	Right-handed alpha
Helix 21	AC3	B	227	234	Right-handed alpha
Helix 22	AC4	C	3	31	Right-handed alpha
Helix 23	AC5	F	2	37	Right-handed alpha
Helix 24	AC6	F	48	82	Right-handed alpha
Helix 25	AC7	F	83	92	Right-handed alpha
Helix 26	AC8	F	94	119	Right-handed alpha
Helix 27	AC9	F	119	135	Right-handed alpha
Helix 28	AD1	F	250	256	Right-handed alpha
Helix 29	AD2	F	259	287	Right-handed alpha
Helix 30	AD3	F	298	322	Right-handed alpha
Helix 31	AD4	F	331	347	Right-handed alpha
Helix 32	AD5	F	350	363	Right-handed alpha
Helix 33	AD6	G	3	38	Right-handed alpha
Helix 34	AD7	G	46	57	Right-handed alpha
Helix 35	AD8	G	57	84	Right-handed alpha
Helix 36	AD9	G	85	92	Right-handed alpha
Helix 37	AE1	G	96	107	Right-handed alpha
Helix 38	AE2	G	107	121	Right-handed alpha
Helix 39	AE3	G	121	140	Right-handed alpha
Helix 40	AE4	G	231	237	Right-handed alpha
Helix 41	AE5	G	241	245	Right-handed 310
Helix 42	AE6	G	246	260	Right-handed alpha
Helix 43	AE7	G	264	294	Right-handed alpha
Helix 44	AE8	G	300	329	Right-handed alpha
Helix 45	AE9	G	332	353	Right-handed alpha

There are 7 sheets in PDB entry 6MJP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	27	first strand
Strand 2	A	3	12	anti-parallel
Strand 3	A	57	62	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	83	first strand
Strand 2	A	158	162	parallel
Strand 3	A	189	193	parallel
Strand 4	A	31	35	parallel
Strand 5	A	206	211	parallel
Strand 6	A	214	219	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	27	first strand
Strand 2	B	3	12	anti-parallel
Strand 3	B	57	62	anti-parallel
Strand 4	B	65	66	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	83	first strand
Strand 2	B	158	162	parallel
Strand 3	B	189	193	parallel
Strand 4	B	31	35	parallel
Strand 5	B	206	211	parallel
Strand 6	B	214	219	anti-parallel

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There are 13 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	161	first strand
Strand 2	C	148	152	anti-parallel
Strand 3	C	128	131	anti-parallel
Strand 4	C	115	119	anti-parallel
Strand 5	C	91	97	anti-parallel
Strand 6	C	82	87	anti-parallel
Strand 7	C	58	69	anti-parallel
Strand 8	C	76	79	anti-parallel
Strand 9	C	100	103	anti-parallel
Strand 10	C	108	111	anti-parallel
Strand 11	C	134	137	anti-parallel
Strand 12	C	142	144	anti-parallel
Strand 13	C	164	166	anti-parallel

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There are 14 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	161	first strand
Strand 2	C	148	152	anti-parallel
Strand 3	C	128	131	anti-parallel
Strand 4	C	115	119	anti-parallel
Strand 5	C	91	97	anti-parallel
Strand 6	C	82	87	anti-parallel
Strand 7	C	58	69	anti-parallel
Strand 8	C	42	52	anti-parallel
Strand 9	F	223	235	anti-parallel
Strand 10	F	203	214	anti-parallel
Strand 11	F	186	196	anti-parallel
Strand 12	F	173	176	anti-parallel
Strand 13	F	158	160	anti-parallel
Strand 14	F	150	151	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	147	154	first strand
Strand 2	G	157	164	anti-parallel
Strand 3	G	168	177	anti-parallel
Strand 4	G	183	196	anti-parallel
Strand 5	G	199	211	anti-parallel
Strand 6	G	215	226	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MJP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MJP