Analysis of interatomic Contacts of Structural Units in PDB entry:
6MJS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MJS entry

There are 4 chains in PDB entry 6MJS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LYS 128
B
 CYS 3LYS 128
C
 CYS 3LEU 127
D
 CYS 3LYS 128
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6MJS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 45Right-handed alpha
Helix 2
AA2
A
55 67Right-handed alpha
Helix 3
AA3
A
68 71Right-handed 310
Helix 4
AA4
A
100 102Right-handed 310
Helix 5
AA5
A
116 120Right-handed 310
Helix 6
AA6
B
40 45Right-handed alpha
Helix 7
AA7
B
55 65Right-handed alpha
Helix 8
AA8
B
66 71Right-handed 310
Helix 9
AA9
B
100 102Right-handed 310
Helix 10
AB1
B
116 120Right-handed 310
Helix 11
AB2
C
40 45Right-handed alpha
Helix 12
AB3
C
55 67Right-handed alpha
Helix 13
AB4
C
68 71Right-handed 310
Helix 14
AB5
C
100 102Right-handed 310
Helix 15
AB6
C
116 120Right-handed 310
Helix 16
AB7
D
40 45Right-handed alpha
Helix 17
AB8
D
55 65Right-handed alpha
Helix 18
AB9
D
67 71Right-handed 310
Helix 19
AC1
D
100 102Right-handed 310
Helix 20
AC2
D
116 120Right-handed 310
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There are 8 sheets in PDB entry 6MJS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 8first strand
Strand 2
A
28 34parallel
Strand 3
A
92 98anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 22first strand
Strand 2
A
122 127parallel
Strand 3
A
108 111anti-parallel
Strand 4
A
49 52anti-parallel
Strand 5
A
82 83anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 8first strand
Strand 2
B
28 34parallel
Strand 3
B
92 98anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 22first strand
Strand 2
B
122 127parallel
Strand 3
B
108 111anti-parallel
Strand 4
B
49 52anti-parallel
Strand 5
B
82 83anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 8first strand
Strand 2
C
28 34parallel
Strand 3
C
92 98anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 21first strand
Strand 2
C
122 126parallel
Strand 3
C
108 111anti-parallel
Strand 4
C
49 52anti-parallel
Strand 5
C
82 83anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 8first strand
Strand 2
D
28 34parallel
Strand 3
D
92 98anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
19 22first strand
Strand 2
D
122 127parallel
Strand 3
D
108 111anti-parallel
Strand 4
D
49 52anti-parallel
Strand 5
D
82 83anti-parallel
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