Analysis of interatomic Contacts of Structural Units in PDB entry:
6MJZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MJZ entry

There are 5 chains in PDB entry 6MJZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 20	GLU 472
B	ILE 20	GLU 472
C	ILE 20	TRP 473
H	VAL 2	SER 121
L	GLN 5	THR 112

There are 40 helices in PDB entry 6MJZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	28	Right-handed 310
Helix 2	AA2	A	65	89	Right-handed alpha
Helix 3	AA3	A	124	139	Right-handed alpha
Helix 4	AA4	A	140	148	Right-handed alpha
Helix 5	AA5	A	148	154	Right-handed alpha
Helix 6	AA6	A	175	187	Right-handed alpha
Helix 7	AA7	A	191	212	Right-handed alpha
Helix 8	AA8	A	228	235	Right-handed alpha
Helix 9	AA9	A	238	246	Right-handed alpha
Helix 10	AB1	A	349	358	Right-handed alpha
Helix 11	AB2	A	359	363	Right-handed 310
Helix 12	AB3	A	452	471	Right-handed alpha
Helix 13	AB4	B	21	26	Right-handed alpha
Helix 14	AB5	B	27	29	Right-handed 310
Helix 15	AB6	B	69	80	Right-handed alpha
Helix 16	AB7	B	83	90	Right-handed 310
Helix 17	AB8	B	125	153	Right-handed alpha
Helix 18	AB9	B	175	187	Right-handed alpha
Helix 19	AC1	B	191	214	Right-handed alpha
Helix 20	AC2	B	227	235	Right-handed alpha
Helix 21	AC3	B	237	246	Right-handed alpha
Helix 22	AC4	B	252	259	Right-handed alpha
Helix 23	AC5	B	349	358	Right-handed alpha
Helix 24	AC6	B	359	363	Right-handed 310
Helix 25	AC7	B	372	374	Right-handed 310
Helix 26	AC8	B	421	425	Right-handed 310
Helix 27	AC9	B	452	471	Right-handed alpha
Helix 28	AD1	C	21	29	Right-handed alpha
Helix 29	AD2	C	65	77	Right-handed alpha
Helix 30	AD3	C	126	137	Right-handed alpha
Helix 31	AD4	C	137	152	Right-handed alpha
Helix 32	AD5	C	175	187	Right-handed alpha
Helix 33	AD6	C	191	214	Right-handed alpha
Helix 34	AD7	C	227	235	Right-handed alpha
Helix 35	AD8	C	235	240	Right-handed alpha
Helix 36	AD9	C	242	247	Right-handed alpha
Helix 37	AE1	C	349	358	Right-handed alpha
Helix 38	AE2	C	359	363	Right-handed 310
Helix 39	AE3	C	452	473	Right-handed alpha
Helix 40	AE4	H	61	64	Right-handed 310

There are 23 sheets in PDB entry 6MJZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	287	first strand
Strand 2	A	37	41	anti-parallel
Strand 3	A	337	339	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	159	first strand
Strand 2	A	169	173	anti-parallel
Strand 3	A	45	52	parallel
Strand 4	A	275	282	anti-parallel
Strand 5	A	268	269	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	227	first strand
Strand 2	A	263	264	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	295	first strand
Strand 2	A	315	319	anti-parallel
Strand 3	A	322	324	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	302	first strand
Strand 2	A	307	308	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	379	first strand
Strand 2	A	382	384	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	32	first strand
Strand 2	B	285	297	anti-parallel
Strand 3	B	36	41	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	32	first strand
Strand 2	B	285	297	anti-parallel
Strand 3	B	315	317	anti-parallel
Strand 4	B	324	325	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	173	first strand
Strand 2	B	47	52	parallel
Strand 3	B	276	280	anti-parallel
Strand 4	B	266	269	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	302	first strand
Strand 2	B	307	309	anti-parallel
Strand 3	B	366	367	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	379	first strand
Strand 2	B	382	385	anti-parallel
Strand 3	B	410	411	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	32	first strand
Strand 2	C	296	297	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	286	287	first strand
Strand 2	C	37	40	anti-parallel
Strand 3	C	337	339	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	48	first strand
Strand 2	C	275	281	anti-parallel
Strand 3	C	265	270	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	303	first strand
Strand 2	C	306	309	anti-parallel
Strand 3	C	366	367	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	317	319	first strand
Strand 2	C	322	324	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	383	385	first strand
Strand 2	C	410	412	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	21	24	anti-parallel
Strand 3	H	77	85	anti-parallel
Strand 4	H	16	18	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	21	24	anti-parallel
Strand 3	H	77	85	anti-parallel
Strand 4	H	67	69	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	59	first strand
Strand 2	H	46	52	anti-parallel
Strand 3	H	34	39	anti-parallel
Strand 4	H	92	96	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	12	14	first strand
Strand 2	L	105	107	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	24	26	first strand
Strand 2	L	72	76	anti-parallel
Strand 3	L	65	68	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	55	56	first strand
Strand 2	L	47	51	anti-parallel
Strand 3	L	37	40	anti-parallel
Strand 4	L	87	88	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MJZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MJZ